PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012711-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 285aa    MW: 31561.8 Da    PI: 7.0442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012711-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-05118137120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++C+ C+k+F+r  n++ H+
  NNU_012711-RA 118 FSCTVCNKTFNRYNNMQMHM 137
                    89*****************9 PP
2zf-C2H214.50.0001203225123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk F  + + ++H +++
  NNU_012711-RA 203 FACRKCGKAFAVRGDWRTHEKNC 225
                    78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.34E-598139No hitNo description
SMARTSM003550.079118140IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367118145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.6E-6118137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128741.0E-4118137No hitNo description
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SMARTSM00355180166198IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.27E-6188223No hitNo description
Gene3DG3DSA:3.30.160.603.0E-6189223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035554203223IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871203223IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MQAPSLSHFS STETDQSTYL EAEEEDEESV LLTLRPPGQH ISRVGLSHHH HHSSEQAESS  60
CVNHSSSTED GVTVALHIGP PSSVGVSTSN TSSSNGAPVE GEYWIPSPAQ ILVGPTQFSC  120
TVCNKTFNRY NNMQMHMWGH GSQYRKGPES LRGTKPASSM LRLPCYCCAE GCKNNIEHPR  180
SKPLKDFRTL QTHYKRKHGA KPFACRKCGK AFAVRGDWRT HEKNCGKLWF CICGSDFKHK  240
RSLKDHIRAF GGGHAPHGVE FCEDEDDDDN DEDNASNGGH GSVYY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265244.10.0PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-122ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A1U8AHH90.0A0A1U8AHH9_NELNU; zinc finger protein WIP6-like
STRINGXP_010265244.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-117C2H2-like zinc finger protein