PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012422-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family S1Fa-like
Protein Properties Length: 89aa    MW: 9923.83 Da    PI: 10.4373
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012422-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA1337.7e-422389470
           S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                   + +eakG+nPGlivllvv +lllvflvgny+ly+yaqk+lPPrkkkP+skkk+k+e+lkqGv++PGe
  NNU_012422-RA 23 KDAEAKGFNPGLIVLLVVVSLLLVFLVGNYALYMYAQKTLPPRKKKPISKKKMKKERLKQGVSAPGE 89
                   568***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046899.2E-412589IPR006779DNA binding protein S1FA
ProDomPD0190131.0E-52889No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MADDFEFSDK VPPSFERVGN VIKDAEAKGF NPGLIVLLVV VSLLLVFLVG NYALYMYAQK  60
TLPPRKKKPI SKKKMKKERL KQGVSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264750.11e-57PREDICTED: DNA-binding protein S1FA
RefseqXP_010264751.11e-57PREDICTED: DNA-binding protein S1FA
SwissprotP425539e-18S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLA0A1U8ABC13e-56A0A1U8ABC1_NELNU; DNA-binding protein S1FA
STRINGXP_010264750.15e-57(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.12e-06S1FA-like DNA-binding protein