PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012402-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NF-YC
Protein Properties Length: 272aa    MW: 31059.3 Da    PI: 7.9483
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012402-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC30.86.1e-101782571999
          NF-YC  19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                     ++P+ rik+i++ + d +  + e+  l+ ka elf+  +   ++  + + +++++    ++++v++ + +dfl d vp++
  NNU_012402-RA 178 CRFPMNRIKRIVRNEGDFRT-TQESIFLFNKATELFLELFCEDAYACSVQDRKKSVGYKHLSSVVSKRKRYDFLSDFVPEK 257
                    689**************986.78999**********87777889999999999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008081.2E-10179241IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.5E-19180256IPR009072Histone-fold
SuperFamilySSF471134.89E-15195257IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAVPVSHLGL DWNRNEGNRN QALRDWRFGG LHLRTVRSVR QNRTPFRDET VRVCRSARFE  60
LEQLKLNPGA ESPRVAVGES NKQEMKSRKS TGTRDTKGEP KAKNKRNRVS KEAEVEVVEV  120
PSSSSREPEE EDEEAKSSND SNGNSNQAAK EEDDGNDDEE DININGNLNR SNGEAGSCRF  180
PMNRIKRIVR NEGDFRTTQE SIFLFNKATE LFLELFCEDA YACSVQDRKK SVGYKHLSSV  240
VSKRKRYDFL SDFVPEKVRA EDALKERRLA ET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227245RKKSVGYKHLSSVVSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264713.10.0PREDICTED: uncharacterized protein LOC104602644
TrEMBLA0A1U8APZ40.0A0A1U8APZ4_NELNU; uncharacterized protein LOC104602644
STRINGXP_010264713.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.14e-31nuclear factor Y, subunit C10