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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_012308-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | bHLH | ||||||||
| Protein Properties | Length: 277aa MW: 30914.4 Da PI: 8.0705 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 41.1 | 3.1e-13 | 70 | 116 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h+++E+rRR+riNs + +Lr+l+P + K++Ka+ L +++++k+L
NNU_012308-RA 70 KSHSQAEKRRRERINSHLTTLRKLIPRS-----DKMDKAALLASVIDHVKDL 116
79************************97.....7****************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 15.535 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.57E-13 | 68 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 8.98E-12 | 70 | 119 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 2.8E-14 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 5.0E-11 | 70 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 2.2E-11 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:3.30.70.260 | 1.6E-4 | 173 | 219 | No hit | No description |
| CDD | cd04873 | 3.32E-5 | 173 | 219 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 277 aa Download sequence Send to blast |
MERCYLPALP EEACLLQYHA LNVGPFLLRW PPPSPLMPPH DSASFPVHGL PPSSLFMEEI 60 AQDRATAASK SHSQAEKRRR ERINSHLTTL RKLIPRSDKM DKAALLASVI DHVKDLKRKA 120 VEISQVFTIP KDVDEVIVDC DRSVEPTTTA TTTTATNDDD NNNSKNGFFI KASLSCDDRP 180 ELFTDLIQAL KGLRLTTVRA EMATMGGRII NVMVLCTKDC QEGVCLSSLK QSLKVVLNRI 240 ASTSMVSMNG RSSKRQRILL PSYYSESYSD HHEPSYV |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010264587.1 | 0.0 | PREDICTED: transcription factor bHLH51-like | ||||
| TrEMBL | A0A1U8AAV2 | 0.0 | A0A1U8AAV2_NELNU; transcription factor bHLH51-like | ||||
| STRING | XP_010264587.1 | 0.0 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G40200.1 | 5e-35 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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