PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012186-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 259aa    MW: 28521.4 Da    PI: 4.5995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012186-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1874124155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  NNU_012186-RA  74 PSYRGVRIRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALAIKG 124
                    57*****887.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.34E-3174134No hitNo description
PfamPF008478.8E-1374124IPR001471AP2/ERF domain
SMARTSM003806.1E-3575138IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2175133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-3175133IPR001471AP2/ERF domain
PROSITE profilePS5103222.89375132IPR001471AP2/ERF domain
PRINTSPR003677.3E-107687IPR001471AP2/ERF domain
PRINTSPR003677.3E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEEAVTEDCE AAQSSSPSFT SYTSITTSSS SSTTMDTNPK ISTEINSRQG LKEVKNANET  60
RRQQKTSSND GKHPSYRGVR IRNWGKWVSE IREPRKKSRI WLGTFPTPEM AARAHDVAAL  120
AIKGNAAFLN FPELAHELPR PASLSHKDIQ AAAAKAAAAT FDKQPASCEV ETEDQGERSG  180
SKFPISDSPS LNFTSDDDAG VRSTDEDALF DLPDLVIDQT TTPNMFDFSS SLMSPAANNF  240
GLQMDEPFLL WEYDHTEFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-18731321272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264429.11e-168PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ76e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1U8AAE41e-167A0A1U8AAE4_NELNU; ethylene-responsive transcription factor ERF039-like
STRINGXP_010264429.11e-168(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]