PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_012069-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | NAC | ||||||||
Protein Properties | Length: 372aa MW: 43101.4 Da PI: 7.2489 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.3 | 2.4e-56 | 22 | 151 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhPtdeelv++yL+kkv+++k++l +vike+d+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ NNU_012069-RA 22 VPPGFRFHPTDEELVDYYLRKKVASRKIDL-DVIKEIDLYKIEPWDLQEkcKIGNeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIY 116 69****************************.9***************952444332555************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 s k++l+g++ktLvfykgrap+g+k+dW+mheyrle NNU_012069-RA 117 S-KHNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 151 *.899*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-61 | 19 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.035 | 22 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-28 | 23 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDYKAVYIPV PCRENMNTFS HVPPGFRFHP TDEELVDYYL RKKVASRKID LDVIKEIDLY 60 KIEPWDLQEK CKIGNEEQNE WYFFSHKDKK YPTGTRTNRA TTAGFWKATG RDKAIYSKHN 120 LIGMRKTLVF YKGRAPNGQK SDWIMHEYRL ETNENGTPQA KGWVVCRVFK KRITTIRKVS 180 DESSCWYDEQ VSFMPDLDSP KRIVQPADMA YHHPYACKQE LGLQYHMPHE AFLQLPQLES 240 PKLPHSAASV SCNSVIAYGL DINNPGSTLQ SSLTQEEQMQ QNHHQHNMNS LYNSNNNEQA 300 VDQVTDWRVL DKFVASQLSH EDASKETNYS NAAAVFHVSD HMNILVRQPN KQELVPEYAS 360 TSTSSCQIDL WK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-51 | 22 | 172 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-51 | 22 | 172 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-51 | 22 | 172 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-51 | 22 | 172 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-51 | 22 | 172 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-51 | 22 | 172 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-51 | 22 | 172 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-51 | 22 | 172 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-51 | 22 | 172 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-51 | 22 | 172 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-51 | 22 | 172 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-51 | 22 | 172 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-51 | 22 | 172 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-51 | 22 | 172 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00136 | DAP | Transfer from AT1G12260 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010264210.1 | 0.0 | PREDICTED: NAC domain-containing protein 7 | ||||
Swissprot | Q9FWX2 | 1e-148 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A1U8AN73 | 0.0 | A0A1U8AN73_NELNU; NAC domain-containing protein 7 | ||||
STRING | XP_010264210.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-131 | NAC 007 |
Publications ? help Back to Top | |||
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