PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012069-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 372aa    MW: 43101.4 Da    PI: 7.2489
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012069-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.32.4e-56221511129
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    +ppGfrFhPtdeelv++yL+kkv+++k++l +vike+d+yk+ePwdL++  k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++
  NNU_012069-RA  22 VPPGFRFHPTDEELVDYYLRKKVASRKIDL-DVIKEIDLYKIEPWDLQEkcKIGNeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIY 116
                    69****************************.9***************952444332555************************************* PP

            NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                    s k++l+g++ktLvfykgrap+g+k+dW+mheyrle
  NNU_012069-RA 117 S-KHNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 151
                    *.899*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6119171IPR003441NAC domain
PROSITE profilePS5100560.03522171IPR003441NAC domain
PfamPF023651.0E-2823150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDYKAVYIPV PCRENMNTFS HVPPGFRFHP TDEELVDYYL RKKVASRKID LDVIKEIDLY  60
KIEPWDLQEK CKIGNEEQNE WYFFSHKDKK YPTGTRTNRA TTAGFWKATG RDKAIYSKHN  120
LIGMRKTLVF YKGRAPNGQK SDWIMHEYRL ETNENGTPQA KGWVVCRVFK KRITTIRKVS  180
DESSCWYDEQ VSFMPDLDSP KRIVQPADMA YHHPYACKQE LGLQYHMPHE AFLQLPQLES  240
PKLPHSAASV SCNSVIAYGL DINNPGSTLQ SSLTQEEQMQ QNHHQHNMNS LYNSNNNEQA  300
VDQVTDWRVL DKFVASQLSH EDASKETNYS NAAAVFHVSD HMNILVRQPN KQELVPEYAS  360
TSTSSCQIDL WK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-512217217166NO APICAL MERISTEM PROTEIN
1ut4_B1e-512217217166NO APICAL MERISTEM PROTEIN
1ut7_A1e-512217217166NO APICAL MERISTEM PROTEIN
1ut7_B1e-512217217166NO APICAL MERISTEM PROTEIN
3swm_A1e-512217220169NAC domain-containing protein 19
3swm_B1e-512217220169NAC domain-containing protein 19
3swm_C1e-512217220169NAC domain-containing protein 19
3swm_D1e-512217220169NAC domain-containing protein 19
3swp_A1e-512217220169NAC domain-containing protein 19
3swp_B1e-512217220169NAC domain-containing protein 19
3swp_C1e-512217220169NAC domain-containing protein 19
3swp_D1e-512217220169NAC domain-containing protein 19
4dul_A1e-512217217166NAC domain-containing protein 19
4dul_B1e-512217217166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264210.10.0PREDICTED: NAC domain-containing protein 7
SwissprotQ9FWX21e-148NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A1U8AN730.0A0A1U8AN73_NELNU; NAC domain-containing protein 7
STRINGXP_010264210.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-131NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]