PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011728-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 478aa    MW: 52956.2 Da    PI: 7.0911
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011728-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.5e-10281328455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  NNU_011728-RA 281 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 328
                    8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-16275345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-10275332No hitNo description
Gene3DG3DSA:4.10.280.106.1E-17277342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7281328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9283333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MNTALPEMLH CLQTPPENLV ESVADLTMLE RKRAQLKRQL QQQQQLRQQS QQRYFGETQF  60
YVFPQPPVTQ AQQFQDLINN DPALREFVNR SMKTDPGLAN DWPDFGKYPI TNTGFGGKTA  120
DFGCNGFGTN SLGTDQSHSV SISRTSSCPP AVPLPDEKGR DSAFVATPST VGRESFKKRK  180
ADKTQNTKIT VPEDTRDKRI KTDAEETKIT VQSTATTTRS TPTTTTTTVT NPSNSNDTTT  240
ANNKSNKETT GDSPKDNSKT PEVPKPDYIH VRARRGQATD SHSLAERVRR EKISERMKYL  300
QDLVPGCNKI TGKAGMLDEI INYVQSLQRQ VEFLSMKLAA VNPSLDFNVD NFFGKESAQT  360
FPACNGNSFP TVGLSSEMAN PAYLQFNPVQ QVVSCGGLDM AINPPDEMTI RRTSSTPISM  420
PEAFLDTTGF TQAPHSSSSW EMDLQGLYKV ELQQGRPAAF PTHPFTGTLE ANNLKMEM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263637.10.0PREDICTED: transcription factor HBI1
TrEMBLA0A1U8ALR30.0A0A1U8ALR3_NELNU; transcription factor HBI1
STRINGXP_010263637.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.13e-60cryptochrome-interacting basic-helix-loop-helix 1