PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_011486-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 279aa MW: 30808.9 Da PI: 5.3156 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.2 | 3.5e-38 | 13 | 68 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ NNU_011486-RA 13 PNCPRCDSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 68 58***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-29 | 1 | 67 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.5E-32 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.91 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 15 | 51 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MDGRWKPNVE LAPNCPRCDS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG GSLRNVPVGG 60 GCRKNRRGKS VRISTDRGLT GNSVYSGGVV SVRAPPDGGA SVASAEATRS DSSNIDLAVL 120 YAKFLNQRPE SDPGIQMHEL TREFDSPLDF PSVSNNSNHE TDQVEFSHHQ LGMVGMVGSQ 180 SQSDQSSETQ LTDVHQAFLS EFDMNNGQQD SISQFTSLDS NAYALQPLPA EELAVQDMFW 240 SNSPVVDSTF MWSATQFQGL EPVNQDQPTL HSNPINATK |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019053989.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.2-like | ||||
TrEMBL | A0A1U8Q5B0 | 0.0 | A0A1U8Q5B0_NELNU; dof zinc finger protein DOF1.2-like | ||||
STRING | XP_010263162.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G52440.1 | 3e-42 | Dof family protein |