PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_011469-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 126aa MW: 14671 Da PI: 10.4671 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.1 | 8.2e-20 | 35 | 115 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF vr++++ +s+ n+ +++++fvCske k++ ++ + + gC+a+l++ +++ kw+vtk+++eH+H+l+ NNU_011469-RA 35 EFYVAYGRRTGFIVRIHHNLRSRLNNAVIDQDFVCSKENKDRISSAT---------CNLEGCNAMLRLALRDGVKWVVTKFVKEHSHKLM 115 6*************************************998887766.........7889****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-16 | 35 | 115 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 126 aa Download sequence Send to blast |
MAMTSLKNNQ LKHYLPMQMP WNHMLVWSLN QEIREFYVAY GRRTGFIVRI HHNLRSRLNN 60 AVIDQDFVCS KENKDRISSA TCNLEGCNAM LRLALRDGVK WVVTKFVKEH SHKLMSPGHG 120 GDRKGF |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010268144.1 | 7e-42 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1U8AYG9 | 2e-40 | A0A1U8AYG9_NELNU; protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_010268144.1 | 3e-41 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18960.1 | 7e-17 | FAR1-related sequence 12 |