PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011383-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 401aa    MW: 45471.8 Da    PI: 6.7867
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011383-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.63.1e-50151431128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++k+k     +++wyfFs+++kky+tg r+nrat++g+Wkatg+dk ++
  NNU_011383-RA  15 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIRDVDLNKLEPWDIQEKCKIgsaPQNDWYFFSHNHKKYPTGMRTNRATAAGFWKATGRDKVIY 109
                    69****************************.9***************964444223456************************************* PP

            NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    s +++ +gl+ktLvfy grap+g+k++W+mheyrl
  NNU_011383-RA 110 S-NSKRIGLRKTLVFYIGRAPHGQKSHWIMHEYRL 143
                    *.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5510179IPR003441NAC domain
PROSITE profilePS5100553.82315179IPR003441NAC domain
PfamPF023651.5E-2616143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MQEEMSLSVN GQSQVPPGFR FHPTEEELLH YYLRKKVAYE KIDLDVIRDV DLNKLEPWDI  60
QEKCKIGSAP QNDWYFFSHN HKKYPTGMRT NRATAAGFWK ATGRDKVIYS NSKRIGLRKT  120
LVFYIGRAPH GQKSHWIMHE YRLHDHTIID SNVCTTQVSG PTGETTQEEG WVVCRVFKQK  180
NHQKSLGSPK KRSNDVNTST CTSNSSMEGS MDQMRRTGQQ ESETDKDVNV SVNATTNDTR  240
FFWSNEMAIN NGLPQELTQQ LQALESPLLS PLGKENIEEL DRIQPSIASS QACYQPTIDI  300
EALKVAKPKA TEPSVNQSSS TINSFLHTKP GFSQWTAVDR LVASHLNGPA ETCKQLACFS  360
VAFCSADHEF QLPQLCDFNR STHYANEDSN STDEVHLWSF T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-461218114167NO APICAL MERISTEM PROTEIN
1ut4_B2e-461218114167NO APICAL MERISTEM PROTEIN
1ut7_A2e-461218114167NO APICAL MERISTEM PROTEIN
1ut7_B2e-461218114167NO APICAL MERISTEM PROTEIN
3swm_A2e-461218117170NAC domain-containing protein 19
3swm_B2e-461218117170NAC domain-containing protein 19
3swm_C2e-461218117170NAC domain-containing protein 19
3swm_D2e-461218117170NAC domain-containing protein 19
3swp_A2e-461218117170NAC domain-containing protein 19
3swp_B2e-461218117170NAC domain-containing protein 19
3swp_C2e-461218117170NAC domain-containing protein 19
3swp_D2e-461218117170NAC domain-containing protein 19
4dul_A2e-461218114167NAC domain-containing protein 19
4dul_B2e-461218114167NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263355.10.0PREDICTED: NAC domain-containing protein 43-like
TrEMBLA0A1U8AL500.0A0A1U8AL50_NELNU; NAC domain-containing protein 43-like
STRINGXP_010263355.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-111NAC family protein