PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_011349-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB_related | ||||||||
Protein Properties | Length: 315aa MW: 34614.8 Da PI: 10.169 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.4 | 2.4e-11 | 19 | 69 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + R+ ++k++w++ NNU_011349-RA 19 KQKWTAEEEAALKAGVLKHGAGKWRTILKDPEfsgvlSLRSNVDLKDKWRN 69 79***********************************88***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.669 | 14 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.54E-15 | 16 | 87 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-6 | 18 | 73 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-13 | 18 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.9E-8 | 19 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.81E-18 | 20 | 70 | No hit | No description |
SMART | SM00526 | 8.1E-14 | 132 | 198 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 24.418 | 135 | 203 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 3.21E-17 | 137 | 211 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.2E-15 | 139 | 204 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 4.0E-9 | 140 | 196 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MKRFLLNDFG GLLLMGAPKQ KWTAEEEAAL KAGVLKHGAG KWRTILKDPE FSGVLSLRSN 60 VDLKDKWRNM SVTANGWGSR EKARLALKRS QQIPKYDDNP MALSTVVRSD EEIVDVKPLA 120 ISGGALQIDG PKRSILSRLD NLILEAITNL KDPSGSNKTS IALYIEDQYW APPNFKRLLS 180 AKLKYLTASG KLIKVKRKYR IAPSLAFSER RRSSGLLLLE ERQKDSSRAE KYDSKILTKS 240 QIDAELAKMR NMTAEEAAAA AARAVAEAEA AIAEAEEAAR EADAAEADAE AAQAFAEAAM 300 MTLKGRNTSK LMIHA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00607 | ChIP-seq | Transfer from AT1G49950 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010263289.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Refseq | XP_010263290.1 | 0.0 | PREDICTED: telomere repeat-binding factor 1-like | ||||
Swissprot | Q8VWK4 | 1e-100 | TRB1_ARATH; Telomere repeat-binding factor 1 | ||||
TrEMBL | A0A1U8A9C5 | 0.0 | A0A1U8A9C5_NELNU; telomere repeat-binding factor 1-like | ||||
STRING | XP_010263289.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-93 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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