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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_010848-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 182aa MW: 20348.1 Da PI: 6.1686 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 14.2 | 0.00013 | 30 | 52 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C C++ F++ L H++ H
NNU_010848-RA 30 YRCVFCKRGFTTAQALGGHMNIH 52
9********************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 20 | 56 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 1.1E-6 | 28 | 57 | No hit | No description |
| PROSITE profile | PS50157 | 11.344 | 30 | 57 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 182 aa Download sequence Send to blast |
MESSHEDSKT SSEDGDQQDH QDDASTGRSY RCVFCKRGFT TAQALGGHMN IHRKERARIR 60 QPAAPSVSNK PDGKEVCPEF PPPSSSRRPL YPPTPDAQRS YHVYFPPSSS SSSAGTRHPQ 120 GHHAGDEFYI RKPQSSSLFE DDCNTNLCLQ IGPVHTNYGE EEKKREAEEV EPDLELRLGH 180 DP |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010262253.1 | 1e-133 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
| TrEMBL | A0A1U8AIG9 | 1e-132 | A0A1U8AIG9_NELNU; transcriptional regulator SUPERMAN-like | ||||
| STRING | XP_010262253.1 | 1e-133 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G53820.1 | 3e-14 | C2H2 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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