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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_010759-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 220aa MW: 24982.2 Da PI: 6.5085 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 54.7 | 2.2e-17 | 1 | 49 | 53 | 101 |
NF-YC 53 lfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101
+fil+ltl sw+++eenk r+++k+d aa++tr difdflvdivp+++l
NNU_010759-RA 1 MFILDLTLHSWNRTEENKHRAFQKNDFAATITRIDIFDFLVDIVPNEDL 49
8*********************************************987 PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.20.10 | 6.1E-10 | 1 | 45 | IPR009072 | Histone-fold |
| SuperFamily | SSF47113 | 4.09E-8 | 1 | 46 | IPR009072 | Histone-fold |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046982 | Molecular Function | protein heterodimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 220 aa Download sequence Send to blast |
MFILDLTLHS WNRTEENKHR AFQKNDFAAT ITRIDIFDFL VDIVPNEDLK DEVLASMPKE 60 ECCLLEVSCW PSSYLLHAST FTAGAMGQAS YSSLEFSSLK VQHQIPSVKK AQTWFQLPPV 120 VIESISIMLK TDLCTDNLEA NYIFLGLVKL CQPEIVNLRV KNGTSYEIGR LFPVVFPFVV 180 NRSALLRTKL AVLYASLLFE GKRLEMRVLL YASALDRILA |
| 3D Structure ? help Back to Top | ||||||
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| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5g49_B | 1e-17 | 1 | 45 | 50 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G08970.4 | 2e-28 | nuclear factor Y, subunit C9 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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