PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_010753-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 546aa MW: 59132.2 Da PI: 8.8587

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_010753-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H NNU_010753-RA 86 FVCEICSKGFQRDQNLQLHRRGH 108 89*******************88 PP
2	zf-C2H2	12.6	0.00041	162	184	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ NNU_010753-RA 162 WKCDKCSKRYAVQSDWKAHSKTC 184 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.44E-7	85	108	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.6E-5	85	108	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.887	86	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.036	86	108	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	88	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	127	157	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.7E-4	150	183	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.44E-7	157	182	No hit	No description
SMART	SM00355	140	162	182	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MMKGFIIQQH PAADQENMSN LTSASGEASV SSGNKAETGA MYPQQSFASP NQTPVVKKKR 60 NLPGNPDPDA EVIALSPKAL LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLKQRTSK 120 EVKKRVYVCP EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH 180 SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITTNPLLAPQ PGSSTSHINL 240 QPQLINNHDL QALSLKREQQ QQQQQLFNLR SDTPPWLACS SVVGAGPGPP PIDFSSSLFS 300 TRIDQEFSRT QPSIHHENLN PNPTPSLPPY NPSASPHMSA TALLQKAAQM GATMSKPSSS 360 TMLRPHQTHM PATTGNTATS VPTTTTGYGL CLSSREEMES GFVHGLATFR SKAGVVSGLI 420 DHVSATAGAG GPSLLQDMMT SLSSATGFDG PPFDEDPFGM LSSKRDGNPN ESLSKTTSTT 480 HHLSRNEGGG SGGGGGAGGN DGLTRDFLGL RAFSHRDILN MAGLDHCMSS SSPYDQSQQN 540 QKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MMKGFIIQQH PAADQENMSN LTSASGEASV SSGNKAETGA MYPQQSFASP NQTPVVKKKR  60
NLPGNPDPDA EVIALSPKAL LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLKQRTSK  120
EVKKRVYVCP EPTCVHHDPS RALGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH  180
SKTCGTREYR CDCGTLFSRR DSFITHRAFC DALAEESARA ITTNPLLAPQ PGSSTSHINL  240
QPQLINNHDL QALSLKREQQ QQQQQLFNLR SDTPPWLACS SVVGAGPGPP PIDFSSSLFS  300
TRIDQEFSRT QPSIHHENLN PNPTPSLPPY NPSASPHMSA TALLQKAAQM GATMSKPSSS  360
TMLRPHQTHM PATTGNTATS VPTTTTGYGL CLSSREEMES GFVHGLATFR SKAGVVSGLI  420
DHVSATAGAG GPSLLQDMMT SLSSATGFDG PPFDEDPFGM LSSKRDGNPN ESLSKTTSTT  480
HHLSRNEGGG SGGGGGAGGN DGLTRDFLGL RAFSHRDILN MAGLDHCMSS SSPYDQSQQN  540
QKPWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-35	158	219	3	64	Zinc finger protein JACKDAW
5b3h_F	5e-35	158	219	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM465183	1e-119	AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010262085.1	0.0	PREDICTED: protein indeterminate-domain 7 isoform X1
Swissprot	Q9LRW7	1e-128	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A1U8AI19	0.0	A0A1U8AI19_NELNU; protein indeterminate-domain 7 isoform X1
STRING	XP_010262085.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-117	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]