PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010640-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRF
Protein Properties Length: 372aa    MW: 42187.6 Da    PI: 8.4768
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010640-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.26.8e-2473116144
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                    d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e
  NNU_010640-RA  73 DPEPGRCRRTDGKKWRCSKEACPDSKYCERHMHRGRNRSRKPVE 116
                    79***************************************987 PP
2QLQ64.62.5e-22743137
            QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                   s+FTa+Q+q+L++Q+l++Ky+++++P+Pp+L+++i++
  NNU_010640-RA  7 SPFTASQWQELEHQALIFKYMVSGVPIPPDLIFPIKR 43
                   89*********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.2E-13743IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-16841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.598843IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.35673117IPR014977WRC domain
PfamPF088792.7E-2074116IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSARSGSPFT ASQWQELEHQ ALIFKYMVSG VPIPPDLIFP IKRSMDASVS SRLFSHQPIG  60
WGCFQMSFSR KADPEPGRCR RTDGKKWRCS KEACPDSKYC ERHMHRGRNR SRKPVEVITA  120
NTSTTISSIP INPSAIINNS SANSSSYSLP SLSSSVAAET NHQHHSYYNI PHHPFLYPHS  180
SSSRPPGNGF SLQNNSSTHL FLDSGSYSQA DKDYRYFHGL KGEVDERAFF SETSRTARSA  240
PDSSLDNSWR FTPLAQSKQR SCSALQGDYS QPQLQSLTDI SKQQKQQQEQ HCFVLGADFK  300
SERPQKMERE EEPQQPLRHF FDEWPPKSRD SWLDLEDDRS NRASFSTTQL SISTPMPSLD  360
FAISNFRTQN DG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261922.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A1U8A9Q80.0A0A1U8A9Q8_NELNU; growth-regulating factor 1-like
STRINGXP_010261922.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-60growth-regulating factor 5