PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_010625-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 156aa MW: 18051.7 Da PI: 9.4353 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.7 | 5.1e-14 | 4 | 77 | 18 | 99 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +p f++ +k e+ + +l+++ g++W+vkl ++ + +++GW++F++ ++L++gDf+vF++ g f v vf++ NNU_010625-RA 4 MPAAFLRYLTADKCEKGEAVLRSRLGETWRVKL--NGLR----FQQGWEDFARHHDLRVGDFLVFRHGGGLVF--DVLVFDT 77 677777444444445569***************..5555....9**********************7654444..7777765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 7.5E-4 | 1 | 78 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.253 | 1 | 78 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.32E-15 | 3 | 76 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-16 | 3 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.8E-11 | 3 | 68 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.46E-17 | 4 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 156 aa Download sequence Send to blast |
MQSMPAAFLR YLTADKCEKG EAVLRSRLGE TWRVKLNGLR FQQGWEDFAR HHDLRVGDFL 60 VFRHGGGLVF DVLVFDTSMC EREYPLLSHV KQEDHTDEEM EETRMKEEAA KDIQSKQKAT 120 RIPISSKAQK KIAYSATKHP FFVAKVTPYS LKKQMA |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019053847.1 | 1e-109 | PREDICTED: B3 domain-containing protein REM10-like | ||||
TrEMBL | A0A1U8Q5H2 | 1e-108 | A0A1U8Q5H2_NELNU; B3 domain-containing protein REM10-like | ||||
STRING | XP_010261889.1 | 1e-112 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24700.1 | 3e-18 | B3 family protein |