PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010531-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 548aa    MW: 58987.2 Da    PI: 5.1345
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010531-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.4e-12327372555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h+++Er RR++i +++ +L+el+P++      K++Ka++L + +eY+k Lq
  NNU_010531-RA 327 HSIAERLRREKIAERMKNLQELVPNS-----NKMDKASMLDEIIEYVKFLQ 372
                    99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.34E-12320376No hitNo description
SuperFamilySSF474594.32E-17320382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.269322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-17324381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9327372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MDEFLDHVFS SSSWSDANGT ERSSWVCSGP AQTNGLLPDL MGEYEGNEKN SNVNLIPSTE  60
IMESLATQNT SIVVGRGSNY GLDKSLIPNE AQPQQEGLDH EKKHSLKGMV NGGLRAGYLG  120
LQLNTTESSQ GDPNLTSPKL LPVIEGLPKS PCAVPDASSV GSNGNEPSGC QLSLGDTHSF  180
NSVPQLWPSL SYGIASSLAS SIVQDKLQGY DLHGEYVDSN SNVLQSRYVR DEKILQLDNF  240
PSTVSINMQD DLHNNCLLPV AGPPITLTRT TGLQSELQFS EGNSVKHYMN QSPVCQLQST  300
PATTAGGCNG SVKPRVRARR GQATDPHSIA ERLRREKIAE RMKNLQELVP NSNKMDKASM  360
LDEIIEYVKF LQLQVKVLSM SRLGAAGAVV PLITEGQAEG SGGLLLSPST GHTNDFLESP  420
DNIAFEQEVV KLMETNVTMA MQYLQSKGLC LMPIALATAI SGGKSSAGPD FGEWKKPSLT  480
NSLNLYGNCS PGDMSQQVPS DGKIARKENV ARNCDREGIT TDGCNRAIIK QEELKGTSCT  540
TTELKHKA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261699.10.0PREDICTED: transcription factor bHLH68-like isoform X1
RefseqXP_010261700.10.0PREDICTED: transcription factor bHLH68-like isoform X1
RefseqXP_010261701.10.0PREDICTED: transcription factor bHLH68-like isoform X1
RefseqXP_010261702.10.0PREDICTED: transcription factor bHLH68-like isoform X1
RefseqXP_010261703.10.0PREDICTED: transcription factor bHLH68-like isoform X1
TrEMBLA0A1U8A9780.0A0A1U8A978_NELNU; transcription factor bHLH68-like isoform X1
STRINGXP_010261699.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-59LJRHL1-like 3