PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_010278-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 306aa MW: 33665.3 Da PI: 5.778

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_010278-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.2e-05	58	83	1	26
CHHHHHHHHHHHHHHHHHHHHHHHCT CS HLH 1 rrrahnerErrRRdriNsafeeLrel 26 r++ + rE+ RRdr+N+ f eL NNU_010278-RA 58 RKVQKADREKLRRDRLNEQFLELGHA 83 5677889***************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.886	57	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MDQWKPEGFC QSVPADLAVT DFQQSSADLC VPSNRLQSSQ PDSSQRAEVE VKDSVAARKV 60 QKADREKLRR DRLNEQFLEL GHALELGLQL DLVGQEKNEL REEKASLKSD IENLNIQYQQ 120 RLRVMFPWAA MDPSVVMAPP SYPYAMPVPV PPGPIPMHPS LQPFPFFRNQ NPGAIPNHCS 180 TFIPYSSPAN PQGEQPSTQY VPPNVQPSNR SHTSSKQDSK SKSLDRQRGC NIEKSDDSND 240 VATELELKTP GSAADQELSS GQRKGKQSQR KENSVVDGSC SSRCSSSKVA QDSSSNSVGD 300 GPKADN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010261279.1	0.0	PREDICTED: transcription factor bHLH121
Swissprot	Q9LT23	9e-51	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A1U8A2M7	0.0	A0A1U8A2M7_NELNU; transcription factor bHLH121
STRING	XP_010261279.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.2	5e-42	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]