PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_010031-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 454aa    MW: 52385.8 Da    PI: 6.087
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_010031-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.51.7e-1310593687
       trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                   +k++e g++rs+k+Ckek+en+ k++k++k+g+  +  ++ + +++fdqlea
  NNU_010031-RA 10 RKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRAAK--QDGKAYRFFDQLEA 59
                   6889******************************96..56667*******85 PP
2trihelix106.71.6e-33276361187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW+k+ev+aLi++r++++ +++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  NNU_010031-RA 276 RWPKSEVQALINLRTNLDLKYQENGPKGPLWEEISSSMKKLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 361
                    8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.7E-9860No hitNo description
PROSITE profilePS500907.724269333IPR017877Myb-like domain
SMARTSM007172.9E-4273335IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-5273332IPR009057Homeodomain-like
SuperFamilySSF466895.91E-5274366IPR009057Homeodomain-like
PfamPF138371.0E-23275362No hitNo description
CDDcd122031.54E-28275340No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEFFETVVIR KLAELGYHRS AKKCKEKFEN VYKYHKRTKD GRAAKQDGKA YRFFDQLEAL  60
DNHSLPPLSP QKVLQTPTTT MPTSTTTATT TTTTTTTTTT MPKENPPNIT QHIVPSSIQN  120
VSTTDFVSTS ATSSSSTDSD EESEGTRRKK KKLMNFFEKL MKEVIDKQER LQMRFLEALE  180
KRERERVERE EAWKIQEMAR MNREHEILVQ ERSIAAAKDT AVIAFLQKIS EQSSPVQLRE  240
VQLPENQMPS EKTVEPPRTD NVNNVVETFS PLSSSRWPKS EVQALINLRT NLDLKYQENG  300
PKGPLWEEIS SSMKKLGYNR SAKRCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD  360
ALYKERTKKM DDSFNPGYGL KPEDLVREMM SLPEQARPLR QEPPRPDSVM EDIGSENLDQ  420
NQEEDGDEDD EDEASGYEIV TNNNNNPSSM AMVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146152RRKKKKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260937.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-111TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A1U8AF150.0A0A1U8AF15_NELNU; trihelix transcription factor GT-2-like
STRINGXP_010260937.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-77Trihelix family protein