PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009951-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 382aa    MW: 43914.7 Da    PI: 4.9875
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009951-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.91.6e-5661331128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeelv +yL +kv+g+++el e+i+evd+yk+ePw+Lp k  + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd+ v+s
  NNU_009951-RA   6 LPPGFRFHPTDEELVAYYLDRKVHGRTIEL-EIIPEVDLYKCEPWELPdKsYLPSKDMEWYFFSPRDRKYPNGSRTNRATRAGYWKATGKDRMVHS 100
                    79****************************.99**************95335666888*************************************9 PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++ vg+kktLv+y+grap+g +t+Wvmheyrl
  NNU_009951-RA 101 -HKRPVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                    .999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-634160IPR003441NAC domain
PROSITE profilePS5100560.8456160IPR003441NAC domain
PfamPF023651.1E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAPVTLPPGF RFHPTDEELV AYYLDRKVHG RTIELEIIPE VDLYKCEPWE LPDKSYLPSK  60
DMEWYFFSPR DRKYPNGSRT NRATRAGYWK ATGKDRMVHS HKRPVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLADSVSEP GSSSSSALRD AYALCRVFKK TIQVPKTKEE QNGCSEELHW  180
LNNEREGLLG DDTSGNVISQ RREVGEETYD QDTSRILSDA SSSEVTEGTP MHHGTTDDQH  240
VSFASDEANS STNVSPLNVD YFSNLSKEIT VLPNCTRLQQ QQQQQQQLSY PPLALEDFPQ  300
MDTLETKLSN PQAMDEYMMP DKYRTYNSDT NIILEEIFYM CSSQDNSMIL SLQDYCNNSS  360
NITSMEIHLT QDNTSCFNNQ NN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-58116012165NO APICAL MERISTEM PROTEIN
1ut4_B1e-58116012165NO APICAL MERISTEM PROTEIN
1ut7_A1e-58116012165NO APICAL MERISTEM PROTEIN
1ut7_B1e-58116012165NO APICAL MERISTEM PROTEIN
3swm_A9e-59116015168NAC domain-containing protein 19
3swm_B9e-59116015168NAC domain-containing protein 19
3swm_C9e-59116015168NAC domain-containing protein 19
3swm_D9e-59116015168NAC domain-containing protein 19
3swp_A9e-59116015168NAC domain-containing protein 19
3swp_B9e-59116015168NAC domain-containing protein 19
3swp_C9e-59116015168NAC domain-containing protein 19
3swp_D9e-59116015168NAC domain-containing protein 19
4dul_A1e-58116012165NAC domain-containing protein 19
4dul_B1e-58116012165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260796.10.0PREDICTED: NAC transcription factor 29
TrEMBLA0A1U8A7000.0A0A1U8A700_NELNU; NAC transcription factor 29
STRINGXP_010260796.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.12e-93NAC domain containing protein 20