PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_009950-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 344aa MW: 38855.8 Da PI: 6.8162 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.4e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl NNU_009950-RA 13 RGLWSPEEDEKLIRYITTHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.8e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++ NNU_009950-RA 66 RGSFSAQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-27 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.569 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-29 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.41E-11 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.757 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-25 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.56E-11 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DEKLIRYITT HGHGCWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGSFS AQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLAQGL 120 DPKTHNLISS HHTTNNNNAC NLLHTHQQPI FTVETQTRER SSITINPPFI TLPPPPPPPP 180 PPPPPPLHPI TTTTTTAAHH PPLHEAITNP IYDYQNPNLV WNAKAQNLLA SVDFVGRSPM 240 DSVPISSATN HPSGLGYLEE NCIWTTSAEP FEPPKQQEMQ QLQQQQQQEV CDVEFDDANE 300 VKGSQDMETS FNSSNFDIDF VDSTMMPCGM YCTSTSMDQI AWDC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010260795.1 | 0.0 | PREDICTED: transcription factor MYB26-like | ||||
TrEMBL | A0A1U8AFR7 | 0.0 | A0A1U8AFR7_NELNU; transcription factor MYB26-like | ||||
STRING | XP_010260795.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 1e-85 | myb domain protein 67 |