PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_009907-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB

Protein Properties

Length: 231aa MW: 26594.1 Da PI: 7.4108

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_009907-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.2	4.6e-14	9	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT................TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg................kgRtlkqcksrwqkyl 48 +g WT+eEd+ll+++v+ +G g Wk I+++ g + R++k+c++rw++yl NNU_009907-RA 9 KGCWTEEEDKLLKRCVEIYGEGKWKHIPARAGkldrpkqclvprmnegLDRCRKSCRLRWLNYL 72 799***********************************************************97 PP
2	Myb_DNA-binding	46.7	7.1e-15	78	123	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ +E +l+++++k+lG++ W++Ia++++ gRt++++k++w+++l NNU_009907-RA 78 RGNFAVDEVDLIIRLHKLLGNR-WSLIAARIP-GRTANDVKNYWNSHL 123 7889999*************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.672	4	72	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-20	5	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.77E-25	6	119	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-13	8	74	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-13	9	72	IPR001005	SANT/Myb domain
CDD	cd00167	1.63E-9	12	72	No hit	No description
PROSITE profile	PS51294	24.879	73	127	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-23	75	128	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-14	77	125	IPR001005	SANT/Myb domain
Pfam	PF00249	9.1E-14	78	123	IPR001005	SANT/Myb domain
CDD	cd00167	2.95E-9	84	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MGRMKNYRKG CWTEEEDKLL KRCVEIYGEG KWKHIPARAG KLDRPKQCLV PRMNEGLDRC 60 RKSCRLRWLN YLRPNIKRGN FAVDEVDLII RLHKLLGNRW SLIAARIPGR TANDVKNYWN 120 SHLSKKLKSE QLLPSNLTTQ LAGPQTSAAN SSEWTTGVSD STGGDHQRQV DEEESGEEET 180 LTFWKRLLLE GEEMKTKSSA EDKEMAVNNE DFLVGFEELV QDGEIWSLLS E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-20	9	129	7	110	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260713.1	1e-147	PREDICTED: transcription factor MYB114-like
Swissprot	Q9FNV9	4e-50	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A1U8AFK2	1e-145	A0A1U8AFK2_NELNU; transcription factor MYB114-like
STRING	XP_010260713.1	1e-146	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	3e-52	myb domain protein 113

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]