PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_009815-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | NF-YC | ||||||||
Protein Properties | Length: 304aa MW: 33355.4 Da PI: 6.0787 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.7 | 2.6e-56 | 115 | 219 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflv NNU_009815-RA 115 QLQVFWANQiqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIFDFLV 210 89******98889*********************************************************************************** PP NF-YC 94 divprdelk 102 divprdelk NNU_009815-RA 211 DIVPRDELK 219 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.19E-34 | 101 | 209 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-21 | 137 | 200 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.4E-37 | 138 | 215 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
PSTPLPLFLS LSLSLSSFSL GFSPLESSGQ ASMDQSGQQQ QSQQQPSAGA VTSAAQITYT 60 SPTYQSSAMV ASGTPAVAVP SATQPATTFS ASQHQLAYQQ AQHFHHQQQQ QQQQQLQVFW 120 ANQIQEIEQT TDFKNHSLPL ARIKKIMKAD EDVRMISAEA PVVFAKACEM FILELTLRSW 180 IHTEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPRDELKE EGLGIPRAAV PAVGAPADSI 240 PYYYVPPPHQ VGAPGMIMGK PVDQAAAALY AAQQPRPPVA YMPWPQPQPQ HQQSQQSQQQ 300 QNDA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 5e-58 | 123 | 215 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 187 | 193 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010260573.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q655V5 | 3e-88 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A1U8AE94 | 0.0 | A0A1U8AE94_NELNU; nuclear transcription factor Y subunit C-2-like | ||||
STRING | XP_010260573.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 4e-72 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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