PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_009809-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 865aa MW: 99496.3 Da PI: 7.2814

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_009809-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.5	3.6e-26	70	155	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y+eYAk++GF +++++s++sk +ge++++++ Cs++g+++e++k ++r+ ++t+Cka+++vk+++dgkw+++++ ++HnHel p NNU_009809-RA 70 CYKEYAKSMGFGISIKNSRRSKISGEFIDAKYACSRYGSKHESSKV----INPRPCSKTDCKASMHVKRRQDGKWVIHNFIKDHNHELLP 155 7***************************************9888....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-24	70	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-33	268	361	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.951	548	584	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.1E-5	549	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.4E-5	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 865 aa Download sequence Send to blast
MAIDLEQPSG EHEAENVGPN EGGITVDDGE IHSGEVDVNS SMVESIVKGG ANAEPHIGME 60 FESKGAAYSC YKEYAKSMGF GISIKNSRRS KISGEFIDAK YACSRYGSKH ESSKVINPRP 120 CSKTDCKASM HVKRRQDGKW VIHNFIKDHN HELLPSQAHF FRSHRNINID ALHAIKRRRK 180 MYALMSKQPD GNQDFGYPNK DIINEFDKGR YLVLEGGDMQ AMLEHFMDMQ DENSNFFYAM 240 DLNEEQRLRN VFWVDAKGRQ DYINFGDVVC FDTTYISSKY KMPLVPFIGV NHHYQFTLFG 300 FALIADETTS TFLWLMNTWL RSMGGRAPNV IVTDQDKALK AAIAEIFPNT RHCFCLWHIL 360 RKIPEKLGHI TKRHENFMKK FNKCIYRSCT EEQFEKRWWK MVDRFELKTD EWFQSLYEDR 420 KYWVPYYMND TFFAGMSTAQ RSESINSSLD RYIHRKTTLK EFVEHYVVVL QDRYEEEAKA 480 DLDTWHKQPA LRSPSPFEKQ MSTIYTHAIF RKFQVEVLGV VACHPKMEKE DETTITYRVQ 540 DFEEQQDFLV SWNERKLEIS CLCHSYEYKG FLCRHAMIVL QISGVSNIPS HYVLKRWTKD 600 AKSRHTMRQG LEGVQSRVQR YNDLCQRAIK LGEEGSLSQD SYNIAFRALD EALRECVGVN 660 NSIQSAVNAN ISATYGIHDI EEEDQGNNTM SMLRMLDAHA TRTSKKKNAN KKRKIHLEPK 720 VTNSGIENSL QDMGQLRAPT LDGSFIAQQS IQGMEQLSSR APAFDTYGTQ QTMQRLGRLN 780 SVMATRDSYY GNQQGMQGLG QLHSIAPSSD SYYGTQQSMQ AIGQIDFRSP TIDGCYGLQD 840 SLPDMGESAQ LHGVARHLHD KHLSP

Sequence ? help Back to Top

Protein Sequence Length: 865 aa Download sequence Send to blast

MAIDLEQPSG EHEAENVGPN EGGITVDDGE IHSGEVDVNS SMVESIVKGG ANAEPHIGME  60
FESKGAAYSC YKEYAKSMGF GISIKNSRRS KISGEFIDAK YACSRYGSKH ESSKVINPRP  120
CSKTDCKASM HVKRRQDGKW VIHNFIKDHN HELLPSQAHF FRSHRNINID ALHAIKRRRK  180
MYALMSKQPD GNQDFGYPNK DIINEFDKGR YLVLEGGDMQ AMLEHFMDMQ DENSNFFYAM  240
DLNEEQRLRN VFWVDAKGRQ DYINFGDVVC FDTTYISSKY KMPLVPFIGV NHHYQFTLFG  300
FALIADETTS TFLWLMNTWL RSMGGRAPNV IVTDQDKALK AAIAEIFPNT RHCFCLWHIL  360
RKIPEKLGHI TKRHENFMKK FNKCIYRSCT EEQFEKRWWK MVDRFELKTD EWFQSLYEDR  420
KYWVPYYMND TFFAGMSTAQ RSESINSSLD RYIHRKTTLK EFVEHYVVVL QDRYEEEAKA  480
DLDTWHKQPA LRSPSPFEKQ MSTIYTHAIF RKFQVEVLGV VACHPKMEKE DETTITYRVQ  540
DFEEQQDFLV SWNERKLEIS CLCHSYEYKG FLCRHAMIVL QISGVSNIPS HYVLKRWTKD  600
AKSRHTMRQG LEGVQSRVQR YNDLCQRAIK LGEEGSLSQD SYNIAFRALD EALRECVGVN  660
NSIQSAVNAN ISATYGIHDI EEEDQGNNTM SMLRMLDAHA TRTSKKKNAN KKRKIHLEPK  720
VTNSGIENSL QDMGQLRAPT LDGSFIAQQS IQGMEQLSSR APAFDTYGTQ QTMQRLGRLN  780
SVMATRDSYY GNQQGMQGLG QLHSIAPSSD SYYGTQQSMQ AIGQIDFRSP TIDGCYGLQD  840
SLPDMGESAQ LHGVARHLHD KHLSP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260557.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A1U8AE84	0.0	A0A1U8AE84_NELNU; protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
STRING	XP_010260557.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]