PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009756-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 185aa    MW: 21289.9 Da    PI: 5.0202
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009756-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.71.3e-205412153128
            NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++++wyfFs+r         +nr+ ++gyW+  g d+++++  ++  g+kk Lvfy g+ap+g kt+W+m+eyrl
  NNU_009756-RA  54 EGDNQWYFFSRRT--------SNRISENGYWNPLGVDEPIFTGARNIAGMKKLLVFYLGEAPEGDKTNWMMQEYRL 121
                    4789******984........58999****************99999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.3126153IPR003441NAC domain
SuperFamilySSF1019411.09E-2552153IPR003441NAC domain
PfamPF023653.6E-1256121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MTTSTFLLAF DFARLMKNWF IFSIGRQHSH HVNQILFQIS SFILMIHGNS VALEGDNQWY  60
FFSRRTSNRI SENGYWNPLG VDEPIFTGAR NIAGMKKLLV FYLGEAPEGD KTNWMMQEYR  120
LSDSGSSSSR SSRKKGSSKR DLTAWVICRV YQRNDDDDDD TGIELSCLDE VFLSFDDLDE  180
ISLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-235215466166NO APICAL MERISTEM PROTEIN
1ut4_B4e-235215466166NO APICAL MERISTEM PROTEIN
1ut7_A4e-235215466166NO APICAL MERISTEM PROTEIN
1ut7_B4e-235215466166NO APICAL MERISTEM PROTEIN
3swm_A5e-235215469169NAC domain-containing protein 19
3swm_B5e-235215469169NAC domain-containing protein 19
3swm_C5e-235215469169NAC domain-containing protein 19
3swm_D5e-235215469169NAC domain-containing protein 19
3swp_A5e-235215469169NAC domain-containing protein 19
3swp_B5e-235215469169NAC domain-containing protein 19
3swp_C5e-235215469169NAC domain-containing protein 19
3swp_D5e-235215469169NAC domain-containing protein 19
4dul_A4e-235215466166NAC domain-containing protein 19
4dul_B4e-235215466166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260450.14e-94PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK63e-39NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1U8ADZ69e-93A0A1U8ADZ6_NELNU; NAC domain-containing protein 104-like
STRINGXP_010260450.11e-93(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-35xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]