PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_009756-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | NAC | ||||||||
Protein Properties | Length: 185aa MW: 21289.9 Da PI: 5.0202 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 65.7 | 1.3e-20 | 54 | 121 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++wyfFs+r +nr+ ++gyW+ g d+++++ ++ g+kk Lvfy g+ap+g kt+W+m+eyrl NNU_009756-RA 54 EGDNQWYFFSRRT--------SNRISENGYWNPLGVDEPIFTGARNIAGMKKLLVFYLGEAPEGDKTNWMMQEYRL 121 4789******984........58999****************99999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.312 | 6 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.09E-25 | 52 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-12 | 56 | 121 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MTTSTFLLAF DFARLMKNWF IFSIGRQHSH HVNQILFQIS SFILMIHGNS VALEGDNQWY 60 FFSRRTSNRI SENGYWNPLG VDEPIFTGAR NIAGMKKLLV FYLGEAPEGD KTNWMMQEYR 120 LSDSGSSSSR SSRKKGSSKR DLTAWVICRV YQRNDDDDDD TGIELSCLDE VFLSFDDLDE 180 ISLPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-23 | 52 | 154 | 66 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-23 | 52 | 154 | 66 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-23 | 52 | 154 | 66 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-23 | 52 | 154 | 66 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-23 | 52 | 154 | 69 | 169 | NAC domain-containing protein 19 |
3swm_B | 5e-23 | 52 | 154 | 69 | 169 | NAC domain-containing protein 19 |
3swm_C | 5e-23 | 52 | 154 | 69 | 169 | NAC domain-containing protein 19 |
3swm_D | 5e-23 | 52 | 154 | 69 | 169 | NAC domain-containing protein 19 |
3swp_A | 5e-23 | 52 | 154 | 69 | 169 | NAC domain-containing protein 19 |
3swp_B | 5e-23 | 52 | 154 | 69 | 169 | NAC domain-containing protein 19 |
3swp_C | 5e-23 | 52 | 154 | 69 | 169 | NAC domain-containing protein 19 |
3swp_D | 5e-23 | 52 | 154 | 69 | 169 | NAC domain-containing protein 19 |
4dul_A | 4e-23 | 52 | 154 | 66 | 166 | NAC domain-containing protein 19 |
4dul_B | 4e-23 | 52 | 154 | 66 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010260450.1 | 4e-94 | PREDICTED: NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 3e-39 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A1U8ADZ6 | 9e-93 | A0A1U8ADZ6_NELNU; NAC domain-containing protein 104-like | ||||
STRING | XP_010260450.1 | 1e-93 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 3e-35 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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