PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_009753-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NF-YC

Protein Properties

Length: 264aa MW: 29352.3 Da PI: 6.3946

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_009753-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	174.6	1.1e-54	81	184	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 ql++fw++q ie+ tdfknh+lPlarikki+kadedv+misaeaPv++++ace+filel+lrsw+h+eenkrrtl+k+diaaa++rtdifdflv NNU_009753-RA 81 QLQVFWSNQyqeIEQITDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELALRSWNHTEENKRRTLQKNDIAAAIKRTDIFDFLV 176 89****99999******************************************************************************* PP NF-YC 94 divprdel 101 divp+++l NNU_009753-RA 177 DIVPKEDL 184 ***987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.18E-32	80	175	IPR009072	Histone-fold
Pfam	PF00808	1.6E-21	103	166	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.9E-37	104	181	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MDQQAHGQPP VMGVVGGSAQ VPYGTTPYQA NQMIAANPPG SVGSIQPTGQ PTGFTGSPAQ 60 LAPHQLAYQH LHQQQQQLQQ QLQVFWSNQY QEIEQITDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVVF ARACEMFILE LALRSWNHTE ENKRRTLQKN DIAAAIKRTD IFDFLVDIVP 180 KEDLKDEVLA SMPRGGALPV GGPADPLPYY YMPQHSPQVG TPGMIMGKPV VDQALYGQQP 240 RPYMAQQIWP QPPQQQQQQP PSDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-60	89	181	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269\|PubMed:25105952}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260435.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Refseq	XP_010260436.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Refseq	XP_010260437.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Refseq	XP_010260438.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Refseq	XP_010260439.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Refseq	XP_010260441.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Refseq	XP_019053665.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Refseq	XP_019053666.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-9-like
Swissprot	Q8L4B2	8e-86	NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBL	A0A1U8A695	0.0	A0A1U8A695_NELNU; nuclear transcription factor Y subunit C-9-like
STRING	XP_010260435.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.4	1e-80	nuclear factor Y, subunit C9

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Gnesutta N, et al. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Plant Cell, 2017. 29(6): p. 1516-1532 [PMID:28526714] Bi C,Ma Y,Wang XF,Zhang DP Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis. Plant Mol. Biol., 2017. 95(4-5): p. 425-439 [PMID:28924726] Liu X, et al. Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering. Plant Physiol., 2018. 177(1): p. 105-114 [PMID:29599268]