PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_009671-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 302aa MW: 33697.9 Da PI: 7.9373

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_009671-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.3	7.8e-33	61	201	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 lp+G++F+Ptd+el+ e+L+ kv+ + ++l+ +++ +i++++P++Lp ++++ +fF++ +k+y+tg+rk+r+++ + + NNU_009671-RA 61 LPAGVKFDPTDQELL-EHLEGKVRPDLHKLHPlidefipTLEGEnGICYTHPEKLP-GLSKDGLIRHFFHRPSKAYTTGTRKRRKVHtdadggETR 154 799**********.99*98874442222332222333336******.454555677**************744456555778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v++ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l NNU_009671-RA 155 WHKTGKTRPVFA-GGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 201 ********.9*********6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-38	56	220	IPR003441	NAC domain
PROSITE profile	PS51005	33.838	61	220	IPR003441	NAC domain
Pfam	PF02365	1.5E-15	62	201	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MTWCNDCDDD TNDRAIQRSS LSTTAVVDDR PPQDRRFITC PSCGHRIESL DQAGIQDLPG 60 LPAGVKFDPT DQELLEHLEG KVRPDLHKLH PLIDEFIPTL EGENGICYTH PEKLPGLSKD 120 GLIRHFFHRP SKAYTTGTRK RRKVHTDADG GETRWHKTGK TRPVFAGGKV KGYKKILVLY 180 TNYGKQRKPE KTNWVMHQYH LGNNEEEKDG ELVVSKVFYQ TQPRQCGSIV KDAIPVPAAK 240 SKALAGHDSS GLKDTGHAHA ALVEYYNSSS LIAYEQSGHN RASSPQLIPD FVVHPDGSSF 300 LP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260337.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-124	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1U8A293	0.0	A0A1U8A293_NELNU; NAC domain-containing protein 73-like
STRING	XP_010260337.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-123	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]