PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009634-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 388aa    MW: 43367.2 Da    PI: 6.8886
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009634-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-08129149526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C +f+r G C++Gd C FaHg
  NNU_009634-RA 129 VCTDFRR-GGCRRGDACEFAHG 149
                    7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.79E-5123153IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915125151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5129151IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6129149IPR000571Zinc finger, CCCH-type
SMARTSM003565.1159182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSSLCAENHQ SFLSGKKGLG DIDAQSGKLL SRRVKLTVSS DTSPDLFGDA MEKPSFEETH  60
HLVHKFLPYN GGDDDDSDPY SNDEFRMYEF KVRRCMRSRS HDWTDCPFAH PGEKARRRDP  120
RRFHYSGNVC TDFRRGGCRR GDACEFAHGV FECWLHPARY RTQACKDGKN CKRKVCFFAH  180
TSRQLRVLPL RSVETQTSPS PTVTSPLGHD KYPISVFSDA NSNHCCVFCH SAASSPTSTL  240
KDFSHLSPPL SPTLSPPLSP DGSLGNEGSM RGFSPLSRYN EHIDPIALNQ FLLGPLNYKG  300
ALSELVSSME AMDLSSTSPT CVNNRYLSSS ANFEEQQQFV LSPSNPQSSF GSGNYFNEDC  360
LSNGFTDEKT NNNGRCYPDL DWVNELVM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260283.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA14e-80C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A1U8A2460.0A0A1U8A246_NELNU; zinc finger CCCH domain-containing protein 2-like
STRINGXP_010260283.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-75C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]