PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_009622-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 316aa MW: 34417.1 Da PI: 8.7146

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_009622-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	8.2e-40	13	73	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ NNU_009622-RA 13 PEQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 73 6899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-29	1	71	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.7E-34	15	71	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	17	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MASSGRIMEK PAPEQALKCP RCDSSNTKFC YYNNYSLSQP RHFCKACKRY WTRGGTLRNV 60 PVGGGCRKNK RVKRSSTSTD ASSSSSSQPT RTQPSPPPPP PPRIDVSTAS NHISSLFYGL 120 PTTPSDINLP FPSFHSRVSN VDTSCTGYNL QPQLNALGLG FSSTTLTSGD AHGDEYRTGF 180 NPSTQIQDVV TSNSLLSNYS SLLGSSSSTS TASLLASSLQ QQRLILGSLN LKERRSANSF 240 QALLPFEDLQ VAGNGDPGMV VKEVKKEEVN GRMSSNVDWN VPCQNPVEAV GSTDPSLYWN 300 STTVESRRRY DDDHQD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260270.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A1U8A5U2	0.0	A0A1U8A5U2_NELNU; dof zinc finger protein DOF1.4-like
STRING	XP_010260270.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	9e-37	Dof family protein