PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009621-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Dof
Protein Properties Length: 329aa    MW: 35718.6 Da    PI: 9.5013
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009621-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.72.6e-3846106262
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                    +++ +kcprCds ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+s+
  NNU_009621-RA  46 QQQPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRSK 106
                    68999***************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027016.3E-3348104IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.83550104IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-195195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105288IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MQQDRGGGGG GGIAGAGGGR MDQMKGLQQH DRRVKPPPPE NQQQQQQQPQ KCPRCDSLNT  60
KFCYYNNYSL SQPRYFCKTC RRYWTQGGTL RNVPVGGGCR KGKRSKKSYT ADNLQNQLPS  120
VPQLSQHQLQ QQQFGSSTTS TSTVITTSGG GNPTLRTKEV DLMIPPSHIP PVAPNPPSIY  180
YPGGGFLSSL AALQSLNQPM NVAGEFGGSN LALLQGFSLP SFSPQQQQQA QQQQLFQIGG  240
GAGRDKTPIH QLLPSEENTI HQQTRPCTSY QEWHQSFINP SNPIVSEAGY WSSNSATNSS  300
ATGHSMNPGH WMPDPPGYAP PSSSSQSFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260261.10.0PREDICTED: dof zinc finger protein DOF5.4-like
RefseqXP_010260262.10.0PREDICTED: dof zinc finger protein DOF5.4-like
RefseqXP_010260263.10.0PREDICTED: dof zinc finger protein DOF5.4-like
RefseqXP_010260264.10.0PREDICTED: dof zinc finger protein DOF5.4-like
RefseqXP_010260265.10.0PREDICTED: dof zinc finger protein DOF5.4-like
RefseqXP_010260266.10.0PREDICTED: dof zinc finger protein DOF5.4-like
RefseqXP_010260267.10.0PREDICTED: dof zinc finger protein DOF5.4-like
RefseqXP_010260268.10.0PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBLA0A1U8A2260.0A0A1U8A226_NELNU; dof zinc finger protein DOF5.4-like
STRINGXP_010260261.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.13e-25TARGET OF MONOPTEROS 6