PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_009260-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | TCP | ||||||||
Protein Properties | Length: 178aa MW: 19482.2 Da PI: 8.2353 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 27.1 | 1.4e-08 | 11 | 81 | 3 | 72 |
TCP 3 gkkdrhskihTkvggRdRRvRlsae..caarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 +kk + h kv+ + R+ +s++ aar+F L++ G++ d++ ie l qak +i+++tgt+++ a++ NNU_009260-RA 11 VKKPLVNDQHNKVNEQGCRIHMSINyaLAARLFLLTRD-GHKFDGQMIERQLCQAKSSIIDATGTETTIARF 81 677777899**************9733579******97.**************************6666544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-6 | 17 | 83 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
QQITSNGALT VKKPLVNDQH NKVNEQGCRI HMSINYALAA RLFLLTRDGH KFDGQMIERQ 60 LCQAKSSIID ATGTETTIAR FLGTSILASL HQKPKPALLS STPFILGKWI KIEDDADVGR 120 KDDTIIAISA IILDLESHSC TRDGCTNTGH GGGNIVVISG RIVSRATNWK SIDCKDWE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010249637.1 | 5e-28 | PREDICTED: transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 8e-22 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A1U7Z8A1 | 1e-26 | A0A1U7Z8A1_NELNU; transcription factor TCP7 | ||||
STRING | XP_010249637.1 | 2e-27 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 3e-24 | TCP family protein |