PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008978-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 350aa    MW: 40654.6 Da    PI: 5.0799
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008978-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.39.3e-37411322102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k++++++d++++ ++sws++gn+f+v+d+++f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i
  NNU_008978-RA  41 FLTKTFDMVDDPSTEGIVSWSRDGNTFIVWDSHTFSMSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQKHLLKNI 127
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    kr+k 
  NNU_008978-RA 128 KRRKA 132
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-3537130IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.7E-3937130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-6137130IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3241130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-204164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-2092104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MNPISPVKEE FPEATPSYSS DPPMAPPQPM EGLHELGPPP FLTKTFDMVD DPSTEGIVSW  60
SRDGNTFIVW DSHTFSMSLL PRYFKHNNFS SFVRQLNTYG FRKVDPDKWE FANEGFLRGQ  120
KHLLKNIKRR KAPPHPSSLQ QFPGGPCVEV GRFGLDGEID RLRRDKQVLL LELVKLRQQQ  180
QHTRAQLQAM ESRIQRTELK QQQMMTFLAR ALQNPSFIQQ LIQQKERRRE LEEAVTKKRR  240
RRIDQGPSDV GVADHEAIQS GEEENPIKAE QKEYGELYGY EGSELEIIAL EMRGFNKAGE  300
EPEEEEDAER EQEFENGSKS LDDGFWEELF SESLLNKQGR IRSREERMEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-273913018120Heat shock factor protein 1
5d5u_B6e-273913027129Heat shock factor protein 1
5d5v_B6e-273913027129Heat shock factor protein 1
5d5v_D6e-273913027129Heat shock factor protein 1
5hdg_A5e-27391308110Heat shock factor protein 1
5hdn_A5e-27391308110Heat shock factor protein 1
5hdn_B5e-27391308110Heat shock factor protein 1
5hdn_C5e-27391308110Heat shock factor protein 1
5hdn_D5e-27391308110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129LKNIKRR
2226241RRRELEEAVTKKRRRR
3236241KKRRRR
4237242KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139855e-42KP013985.1 Populus simonii heat shock transcription factor A6b1 (HsfA6b1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019053524.10.0PREDICTED: heat stress transcription factor A-2b-like
SwissprotQ6VBB21e-120HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A1U8Q3Y00.0A0A1U8Q3Y0_NELNU; heat stress transcription factor A-2b-like
STRINGXP_010279247.11e-175(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-105heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]