PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_008894-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 381aa MW: 44265.6 Da PI: 7.1773

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008894-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.6	4.1e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhPtdeelv++yL+kk+++++++l +vik++d+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ NNU_008894-RA 7 VPPGFRFHPTDEELVDYYLRKKIASRRIDL-DVIKDIDLYKIEPWDLQEkcKIGTeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIY 101 69**************************.9***********952444443555*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 s +++l+g++ktLvfykgrap+g+k+dW+mheyrle NNU_008894-RA 102 S-RHNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-60	5	172	IPR003441	NAC domain
PROSITE profile	PS51005	59.027	7	172	IPR003441	NAC domain
Pfam	PF02365	2.0E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MNSFSHVPPG FRFHPTDEEL VDYYLRKKIA SRRIDLDVIK DIDLYKIEPW DLQEKCKIGT 60 EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI YSRHNLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GTPQASILVT INVTLIELHQ EEGWVVCRVF KKRITTMRKV 180 SEHESPCWYD EQVSFMPDLD SPKRIIAQPQ PDHMPFHQPY SCKQELELQY HMPHDAFVQL 240 PQLESPKLPH SVASVRCNSM AGYVLDINNH GSSLQSSLTQ EEQMQKSHHQ HNVNNSLYNN 300 NNNSNEQAVD QVTTDWRVLD KFVASQLSHE HASKETNYSN AANVFHVSDQ VSILVRQPNK 360 QQLAPEYAST STSSCQIDLW K

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MNSFSHVPPG FRFHPTDEEL VDYYLRKKIA SRRIDLDVIK DIDLYKIEPW DLQEKCKIGT  60
EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAI YSRHNLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTPQASILVT INVTLIELHQ EEGWVVCRVF KKRITTMRKV  180
SEHESPCWYD EQVSFMPDLD SPKRIIAQPQ PDHMPFHQPY SCKQELELQY HMPHDAFVQL  240
PQLESPKLPH SVASVRCNSM AGYVLDINNH GSSLQSSLTQ EEQMQKSHHQ HNVNNSLYNN  300
NNNSNEQAVD QVTTDWRVLD KFVASQLSHE HASKETNYSN AANVFHVSDQ VSILVRQPNK  360
QQLAPEYAST STSSCQIDLW K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-50	6	173	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010259028.1	0.0	PREDICTED: NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-145	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A1U7ZYT7	0.0	A0A1U7ZYT7_NELNU; NAC domain-containing protein 7
STRING	XP_010259028.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-130	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]