PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_008759-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 26146.5 Da PI: 8.2442 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.9 | 3.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRr g++KKA+ELSvLCda +iifss+gk+yey+s NNU_008759-RA 9 KRIENTTNRQVTFSKRRGGLMKKAHELSVLCDAHLGLIIFSSSGKMYEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 73.9 | 4.6e-25 | 71 | 162 | 1 | 92 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 yqk sg++ +e +++ + e++++k+e++ Lq + Rh+ GedL sL +++L+qLe+qLe+s++k+R++Kn+ll +q+++l++k e+q + + NNU_008759-RA 71 YQKVSGTRIQEYDNQLVYSEMTRMKNETDRLQASMRHFTGEDLASLPYNDLHQLEEQLENSVNKVRARKNQLLNQQLDNLRRKLIEHQAAME 162 899999*****************************************************************************998876543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.394 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-34 | 2 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.25E-47 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.9E-22 | 81 | 165 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.76 | 84 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGRGKIEIKR IENTTNRQVT FSKRRGGLMK KAHELSVLCD AHLGLIIFSS SGKMYEYCSS 60 QSSMQQIIER YQKVSGTRIQ EYDNQLVYSE MTRMKNETDR LQASMRHFTG EDLASLPYND 120 LHQLEEQLEN SVNKVRARKN QLLNQQLDNL RRKLIEHQAA MEHQQSLMEQ STEHTVLDHF 180 GLYAEEQGRN MLQLSTLSPQ INPYRLQPTQ PNLQETNLQG HGLQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-21 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 3e-21 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 3e-21 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 3e-21 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 3e-21 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 3e-21 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 3e-21 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 3e-21 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019053529.1 | 1e-162 | PREDICTED: MADS-box protein AeAP3-2-like | ||||
Swissprot | Q9XGJ4 | 1e-84 | GGM13_GNEGN; MADS-box protein GGM13 | ||||
TrEMBL | A0A1U8Q3Y5 | 1e-160 | A0A1U8Q3Y5_NELNU; MADS-box protein AeAP3-2-like | ||||
STRING | XP_010258808.1 | 1e-161 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.3 | 1e-56 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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