PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_008754-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 302aa MW: 33806 Da PI: 7.5815 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 133 | 187 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k NNU_008754-RA 133 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 187 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128 | 4.1e-41 | 133 | 222 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l NNU_008754-RA 133 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 222 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.4E-35 | 2 | 107 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 109 | 190 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.75E-18 | 124 | 190 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 129 | 189 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-16 | 131 | 193 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.0E-16 | 133 | 187 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.70E-15 | 133 | 190 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 164 | 187 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.6E-27 | 189 | 232 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.3E-11 | 189 | 223 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MMVEKEDLGL SLSLSTADSR HSLQLNLMPS SVSSSPASPF VAQKNTWNEA FASSDRNSDM 60 FRGETRTFLR GIDVNRMPST VDCEEEAAVS SPNSTISSVS GKRSERDTNG EEHEIERACS 120 RGISDEEDGD MSRKKLRLSK DQSAVLEESF KEHNTLNPKQ KLALAKQLNL RPRQVEVWFQ 180 NRRARTKLKQ TEVDCEFLKR CCENLTEENR RLQKEVQELR ALKLSPQFYM HMTPPTTLTM 240 CPSCERVAVS SSSSAATATV AVDAPHHPMA MAGPHHHRPI AINPWAAAPI HHRPFDAPAP 300 RS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 137 | SRKKLRL |
2 | 181 | 189 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010258803.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | P46601 | 1e-111 | HAT2_ARATH; Homeobox-leucine zipper protein HAT2 | ||||
TrEMBL | A0A1U7ZWF6 | 0.0 | A0A1U7ZWF6_NELNU; homeobox-leucine zipper protein HAT4-like | ||||
STRING | XP_010258803.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 1e-92 | homeobox protein 2 |
Publications ? help Back to Top | |||
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