PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008703-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 552aa    MW: 61091.5 Da    PI: 8.5845
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008703-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.72.9e-122958635
           GATA  6 ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   t +TplWR+gp  ++ LCnaCG ++r kg+
  NNU_008703-RA 29 TNSTPLWRNGPPEKPILCNACGSRWRTKGT 58
                   778********66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-41970IPR000679Zinc finger, GATA-type
CDDcd002023.46E-112968No hitNo description
PfamPF003206.5E-102958IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-62962No hitNo description
Gene3DG3DSA:3.30.50.101.3E-82958IPR013088Zinc finger, NHR/GATA-type
PfamPF139192.1E-9301383IPR028020ASX homology domain
PfamPF165507.7E-9316382IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MLPLRSSITA VRAKNERTVK VNRRNTKPTN STPLWRNGPP EKPILCNACG SRWRTKGTLA  60
NYTPLHARVE TDDYEDYKAP KVKSISIKAK EAKLHKRKKS HDNMIVGRGA PEYDQTFRKG  120
LEEDTSNRSS SGSAISYSEG CAQFGGTDAS DFTGPPQSMV WDTLVPSRKR TCVSRPKPSP  180
VEKLTKDLCS ILHEQQASSY FSGSSEEDLL FESETPMVSV EIGHGSVLIK HPGSVTREEE  240
SEASSLSMDN KPYTVNEAYS GSASILIHSN KGICFPTLGN EKLKKSTGQD TEQDQMKRDK  300
TLFEKSQILR HRNSPLRSIN LKDVVSFEEF ANHLTHEEQQ QLVKYLPSTD TARLPDSLKS  360
MFDSPQFKEN LSSFQKLLAE GVFDLSFPGG TTEDCKTLKR LLLVNLATSK WVEHYNLLKD  420
VKCKKVTGGK GVATGNSVLG SSDFSAIKRP RDGQYHNFSE PKTTIKSPKR VGMKASYDND  480
GSCFSPGSLF TFPPDGSTLM FDSFQYTDDS SDQDLLLDVP SNGSFPQAEL LPPSSSFSVQ  540
QASTSSSADK RL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195100KRKKSH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258735.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-131GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A1U7ZY230.0A0A1U7ZY23_NELNU; GATA transcription factor 26-like
STRINGXP_010258735.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-127GATA transcription factor 26