PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_008679-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 311aa MW: 35041.8 Da PI: 7.7916

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008679-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.7	3.8e-52	11	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhP+deelv++yL k++ g++ + ++ + evd++k+ePwdLp+++ + kewyfFs+rd+kyatg r+nrat sgyWkatgkd++ NNU_008679-RA 11 LPPGFRFHPRDEELVCDYLMKRIIGNHhgkgSSYDSPlLIEVDLNKCEPWDLPEMACVGGKEWYFFSQRDRKYATGLRTNRATVSGYWKATGKDRQ 106 79******************999996666334334499*********7667799******************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + kg+lvg++ktLvfy+grapkg+ktdWvmhe+r+ NNU_008679-RA 107 INR-KGTLVGMRKTLVFYQGRAPKGRKTDWVMHEFRV 142 9.999****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-61	2	169	IPR003441	NAC domain
PROSITE profile	PS51005	57.694	11	169	IPR003441	NAC domain
Pfam	PF02365	4.4E-27	12	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MSSLSMVEAK LPPGFRFHPR DEELVCDYLM KRIIGNHHGK GSSYDSPLLI EVDLNKCEPW 60 DLPEMACVGG KEWYFFSQRD RKYATGLRTN RATVSGYWKA TGKDRQINRK GTLVGMRKTL 120 VFYQGRAPKG RKTDWVMHEF RVEGPSDPPK ISSQMSKQED WVLCRVFFKS RGHSAKPSVE 180 NCYDDTGSSS LPPLMDSFIT FDQTPANLEE FEQVPCFSNF SQVLMTNPTL SQLAQIEPNI 240 PTKALNNLGN IPDMGTGLNP FSCDKKVIKA VLSHLNKLES NPKVDLSPSF GEGSSESYLS 300 EVGLPSLWNH Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-51	6	169	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-51	6	169	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-51	6	169	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-51	6	169	12	165	NO APICAL MERISTEM PROTEIN
4dul_A	9e-51	6	169	12	165	NAC domain-containing protein 19
4dul_B	9e-51	6	169	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258675.1	0.0	PREDICTED: NAC domain-containing protein 21/22
Swissprot	Q84TE6	1e-122	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A1U8A1Q7	0.0	A0A1U8A1Q7_NELNU; NAC domain-containing protein 21/22
STRING	XP_010258675.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	1e-124	NAC domain containing protein 1

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]