PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008604-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 723aa    MW: 80606 Da    PI: 8.6693
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008604-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.91.9e-07668711647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                      t Ed ll   vkq+G++ W++I+++mg  ++R +k+  + w ++
    NNU_008604-RA 668 TKEDRLLRAFVKQYGPKEWHLISQCMGkpLHRDAKSYLEQWKNH 711
                      57*************************99999998766666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513757.9365282IPR002885Pentatricopeptide repeat
PfamPF015354.7E-45780IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.3E-45779IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.106.5E-1558114IPR011990Tetratricopeptide-like helical domain
PfamPF128543.6E-783110IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.49883117IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.6E-785113IPR002885Pentatricopeptide repeat
PfamPF015350.073116144IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.106.5E-15147277IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.103149183IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.884184214IPR002885Pentatricopeptide repeat
PfamPF015350.0022189214IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.7E-4189216IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.068215245IPR002885Pentatricopeptide repeat
PfamPF015350.0052218246IPR002885Pentatricopeptide repeat
SuperFamilySSF484522.18E-9222278IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.438246281IPR002885Pentatricopeptide repeat
PfamPF015350.0015248276IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.404282316IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.988350380IPR002885Pentatricopeptide repeat
SuperFamilySSF484521.29E-8361405IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484522.18E-9380643IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137511.608381415IPR002885Pentatricopeptide repeat
PfamPF130411.6E-10381427IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.6E-5383416IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.853416450IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.267451481IPR002885Pentatricopeptide repeat
PfamPF015350.011456478IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0015456479IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.9E-6461513IPR011990Tetratricopeptide-like helical domain
PfamPF130411.3E-9483529IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.224483517IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.6E-6485518IPR002885Pentatricopeptide repeat
SuperFamilySSF484521.29E-8498512IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.807518548IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.805554584IPR002885Pentatricopeptide repeat
PfamPF015350.017557581IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.106.5E-15584642IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484521.29E-8593644IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.862620650IPR002885Pentatricopeptide repeat
PfamPF131769.9E-4623647IPR019734Tetratricopeptide repeat
PROSITE profilePS5129410.562658716IPR017930Myb domain
SMARTSM007171.4E-4662714IPR001005SANT/Myb domain
PfamPF139213.3E-6669714No hitNo description
Gene3DG3DSA:1.10.10.601.8E-8669714IPR009057Homeodomain-like
SuperFamilySSF466898.16E-6669717IPR009057Homeodomain-like
CDDcd001674.37E-6670712No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MCVSVKEPSV PPSFFSPSDF YATLLQTSLK TNIPIAGKSI HARIIKTGLH LGVFLTNNLI  60
NFYAKAGSVS DAHKLFDEMP LKNTFSWNTI LSAYAKQGRM DVACRIFEEM PDHDSVSWTT  120
MIVGQNQLRC FHNAIWMFLE MIWSRVPPTK FTFTNILASC VALGDLDLGR KVHSFVVKLG  180
LSSYVPVANS LLNMYGKSGD PVTAKVVFDR MRLRSISSWN TMISLHTQYD RFDLALAQFE  240
QMTERDVVSW NAMIAGYNQH GHDLEAVHFF SRLLKESSTM PDKFTLASTL SACANLEMLK  300
PGMQIHAYTF RTGLNIYGPV QNALISMYSK SGGVKIARKI VEKSMTTNLN VISFTSLLDG  360
YIKLGDINPA RQIFDSLRDR DVVAWTAMIA GYVQNGFNKD AIDLFRLMVD EGPKPNNYTL  420
AAMLSVCSSL ASLEHGKQIH ANAIRSGEDS SVSVGNALIT MYAKAGNIEG ARRVFNQIHL  480
NRDTVSWTSM IIGLAQHGLG EEAIKLFEMM LVFEIKPDHI TYVGVISACT HAGLVEQGKN  540
YFTLMQSIHR INPTPSHYAC MIDLFGRAGL LEEAQHFIEK MPIKPDSIAW GSLLASCKVH  600
KNVELAKISA ENLLSIDPNN SGAYSALANV YSACGRWDDA AKIRKREEAA ATGDMLVRRD  660
EGEATLATKE DRLLRAFVKQ YGPKEWHLIS QCMGKPLHRD AKSYLEQWKN HLKPGLLLRA  720
AFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D4e-6376433338PLS9-PPR
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258546.10.0PREDICTED: pentatricopeptide repeat-containing protein At2g22070
SwissprotQ9SHZ80.0PP168_ARATH; Pentatricopeptide repeat-containing protein At2g22070
TrEMBLA0A1U8A1F30.0A0A1U8A1F3_NELNU; pentatricopeptide repeat-containing protein At2g22070
STRINGXP_010258546.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.25e-25pentatricopeptide (PPR) repeat-containing protein
Publications ? help Back to Top
  1. Aubourg S,Boudet N,Kreis M,Lecharny A
    In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants.
    Plant Mol. Biol., 2000. 42(4): p. 603-13
    [PMID:10809006]
  2. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]