PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_008570-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Nin-like

Protein Properties

Length: 400aa MW: 42996.4 Da PI: 8.2445

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008570-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	94.2	9.2e-30	29	79	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +isl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ NNU_008570-RA 29 ERNISLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 79 789**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.893	18	99	IPR003035	RWP-RK domain
Pfam	PF02042	8.4E-27	31	79	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.54E-22	296	383	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.6E-24	297	379	No hit	No description
PROSITE profile	PS51745	25.565	300	382	IPR000270	PB1 domain
SMART	SM00666	1.3E-23	300	382	IPR000270	PB1 domain
CDD	cd06407	4.24E-31	301	380	No hit	No description
Pfam	PF00564	5.0E-19	301	380	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MTNIYFSRSI LVASNFSRKK LEKKRNTAER NISLSVLQQY FSGSLKDAAK SIGVCPTTLK 60 RICRQHGISR WPSRKINKVN RSLRKIQTVI DSVQGVEGGL KFDPVTGGLV SAASIVQDLV 120 RTNVFSPQKN LASRNPDSTA KHVISVSPRS HIGGDSTAVK LEGGDCSASA QQGEPVGNML 180 LSNTIKGERE PLIDCSHECK LLDSGLLQPV RCNIGGQSEG GDLNLLSSDC QITSQSSSCM 240 PAADDIDAGI VGDAQPSSSG TTDSSNGSGS LINGSASSSP SFNKQKNSRV KTCPRDSGSV 300 ITVKATYKDD TVRFKFEPDR GCAQLMDEVA KRFRLQIGTF QLKYLDDEDE WVLLMSDSDM 360 QECVEILESI GSRSVKLMVR NLPCGTGSSD SSNCFFTGGS

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MTNIYFSRSI LVASNFSRKK LEKKRNTAER NISLSVLQQY FSGSLKDAAK SIGVCPTTLK  60
RICRQHGISR WPSRKINKVN RSLRKIQTVI DSVQGVEGGL KFDPVTGGLV SAASIVQDLV  120
RTNVFSPQKN LASRNPDSTA KHVISVSPRS HIGGDSTAVK LEGGDCSASA QQGEPVGNML  180
LSNTIKGERE PLIDCSHECK LLDSGLLQPV RCNIGGQSEG GDLNLLSSDC QITSQSSSCM  240
PAADDIDAGI VGDAQPSSSG TTDSSNGSGS LINGSASSSP SFNKQKNSRV KTCPRDSGSV  300
ITVKATYKDD TVRFKFEPDR GCAQLMDEVA KRFRLQIGTF QLKYLDDEDE WVLLMSDSDM  360
QECVEILESI GSRSVKLMVR NLPCGTGSSD SSNCFFTGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258489.1	0.0	PREDICTED: protein NLP9
Swissprot	Q9M1B0	1e-89	NLP9_ARATH; Protein NLP9
TrEMBL	A0A1U7ZXH8	0.0	A0A1U7ZXH8_NELNU; protein NLP9
STRING	XP_010258489.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	4e-52	Nin-like family protein