PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_008524-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 410aa MW: 45911.7 Da PI: 8.1373 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.3 | 6.2e-53 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 + pGfrFhPtdeelv +yLk+k+++k+l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ NNU_008524-RA 14 MLPGFRFHPTDEELVAFYLKRKIQQKNLSI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSe 108 579***************************.89***************8888999***************************************95 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg ktdW+mhe+rl NNU_008524-RA 109 GTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 6667***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.63E-58 | 12 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.794 | 14 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 410 aa Download sequence Send to blast |
MDEKNDMDKM DEVMLPGFRF HPTDEELVAF YLKRKIQQKN LSIELIKQLD IYKYDPWDLP 60 KLATTGEKEW YFYCPRDRKY RNSTRPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSLSDSVPP KKTTPMDKNL PANDSWAICR IFKKTNSIGQ 180 RALSHSWVSP LPETARSDIR SQAAAHYPQF SPENISCTTE AGSSAVHQFG FNNDLHQSST 240 TCSSHSALDA PSYKSINQQA FSKTSLLPFS NGDLPSGFTF SPLEISGAGK CTIDAASMLL 300 NLSPVIMGDV GKTSDSIDFG GTQQQLNGFS ISLPQEMQGH MGTGVEETCL RKNSNISYVN 360 NQQWENVRTI GFPFSLPSST FDAWKPNFPW DSSPCPSEMS TSYSTNKCYT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-54 | 5 | 177 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-54 | 5 | 177 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-54 | 5 | 177 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-54 | 5 | 177 | 7 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-54 | 5 | 177 | 7 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-54 | 5 | 177 | 7 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010258365.1 | 0.0 | PREDICTED: protein FEZ | ||||
Swissprot | Q9ZVH0 | 1e-104 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A1U8A9X4 | 0.0 | A0A1U8A9X4_NELNU; protein FEZ | ||||
STRING | XP_010258365.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-101 | NAC family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|