PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008524-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 410aa    MW: 45911.7 Da    PI: 8.1373
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008524-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36.2e-53141411128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    + pGfrFhPtdeelv +yLk+k+++k+l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ 
  NNU_008524-RA  14 MLPGFRFHPTDEELVAFYLKRKIQQKNLSI-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSSe 108
                    579***************************.89***************8888999***************************************95 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  NNU_008524-RA 109 GTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141
                    6667***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-5812174IPR003441NAC domain
PROSITE profilePS5100556.79414174IPR003441NAC domain
PfamPF023651.4E-2516141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDEKNDMDKM DEVMLPGFRF HPTDEELVAF YLKRKIQQKN LSIELIKQLD IYKYDPWDLP  60
KLATTGEKEW YFYCPRDRKY RNSTRPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPSLSDSVPP KKTTPMDKNL PANDSWAICR IFKKTNSIGQ  180
RALSHSWVSP LPETARSDIR SQAAAHYPQF SPENISCTTE AGSSAVHQFG FNNDLHQSST  240
TCSSHSALDA PSYKSINQQA FSKTSLLPFS NGDLPSGFTF SPLEISGAGK CTIDAASMLL  300
NLSPVIMGDV GKTSDSIDFG GTQQQLNGFS ISLPQEMQGH MGTGVEETCL RKNSNISYVN  360
NQQWENVRTI GFPFSLPSST FDAWKPNFPW DSSPCPSEMS TSYSTNKCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5451777168NO APICAL MERISTEM PROTEIN
1ut4_B2e-5451777168NO APICAL MERISTEM PROTEIN
1ut7_A2e-5451777168NO APICAL MERISTEM PROTEIN
1ut7_B2e-5451777168NO APICAL MERISTEM PROTEIN
4dul_A2e-5451777168NAC domain-containing protein 19
4dul_B2e-5451777168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258365.10.0PREDICTED: protein FEZ
SwissprotQ9ZVH01e-104FEZ_ARATH; Protein FEZ
TrEMBLA0A1U8A9X40.0A0A1U8A9X4_NELNU; protein FEZ
STRINGXP_010258365.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-101NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]