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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_008500-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | Nin-like | ||||||||
| Protein Properties | Length: 274aa MW: 32044.6 Da PI: 5.5695 | ||||||||
| Description | Nin-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | RWP-RK | 81.7 | 7.1e-26 | 125 | 174 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
+e++ +++s+yF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl
NNU_008500-RA 125 NELTRSTISRYFYMPITQAAKELNIGLTLLKKRCRELGIRRWPHRKLISL 174
689*******************************************9886 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51519 | 17.677 | 106 | 195 | IPR003035 | RWP-RK domain |
| Pfam | PF02042 | 3.2E-21 | 127 | 174 | IPR003035 | RWP-RK domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0051302 | Biological Process | regulation of cell division | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 274 aa Download sequence Send to blast |
MACEEDACSK YLTHLDFSGY PIPLSWQWEF PIPESIFEPI PLMESFPTDP IYTSIEEFEN 60 PFLCQEDFYI GHRNGIGIWD DLNFGFEVET GKEIILYNDN SKEAGESLIR EKPKRVREEK 120 SLGSNELTRS TISRYFYMPI TQAAKELNIG LTLLKKRCRE LGIRRWPHRK LISLQTLIKN 180 VQELGKENRD VSREKLRNAV EILEQERKLM EEMPDLQLEE KTKKLRQACF KANYKKRKLM 240 GMIDLPTSST TNTWPESYDS LCGEIQTQKR GQSS |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010258431.1 | 0.0 | PREDICTED: protein RKD1-like | ||||
| TrEMBL | A0A1U8AA29 | 0.0 | A0A1U8AA29_NELNU; protein RKD1-like | ||||
| STRING | XP_010258431.1 | 0.0 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G18790.1 | 4e-52 | RWP-RK domain-containing protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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