PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008484-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB
Protein Properties Length: 475aa    MW: 52801.7 Da    PI: 6.3952
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008484-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-16164209147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
    NNU_008484-RA 164 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 209
                      899*****************************.***********996 PP
2Myb_DNA-binding569.4e-18216259146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
    NNU_008484-RA 216 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 259
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.17159210IPR017930Myb domain
SMARTSM007172.9E-14163212IPR001005SANT/Myb domain
PfamPF002491.0E-15164209IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-27164257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-25165217IPR009057Homeodomain-like
CDDcd001674.01E-13167208No hitNo description
PROSITE profilePS5129427.288211265IPR017930Myb domain
SMARTSM007172.1E-14215263IPR001005SANT/Myb domain
PfamPF002493.1E-14216258IPR001005SANT/Myb domain
CDDcd001671.52E-11218258No hitNo description
Gene3DG3DSA:1.10.10.601.1E-20218264IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MRMTLQQFST TIPHQEEEDM TNDHHMYGNA PDQSNGLSSY SSTTSTSSPC SSSMGMFADI  60
GSLSINPKSA SQESNDCKSF DKDNRRGGWA FPFMGNSTSS LEDPHNSESD DAKVSESSNG  120
FGENNAIAQD KYNKHPHNFN EENPNVNSVN GKELDSGQSK LCARGHWRPA EDSKLKELVA  180
LYGPQNWNLI AEKLEGRSGK SCRLRWFNQL DPRINRRAFT EEEEERLMAA HRLYGNKWAM  240
IARLFPGRTD NAVKNHWHVI MARKYREQSS AYRRRKFNQT VSRRLEENGS FACRDASTTI  300
TDSNCLNLYN GSFNNSSPFP FAALFGGGVS GSNGLPHVTS GDDSAPFPRR EMLLGSSSRN  360
NFPPHSGFCA EQVPFDFFSG TKNHGMTGLF GQNRQWDRPS DDSSTFTGFY TTQSPMMPMQ  420
QSDQYQPSSF SDSTTSTSQL SVTEASSSVA DNSRTSHFES TISPPFIDFL GVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-331642647107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4520544e-80AM452054.2 Vitis vinifera contig VV78X006594.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258320.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A1U8A0V40.0A0A1U8A0V4_NELNU; transcription factor MYB108-like
STRINGXP_010258320.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-76myb domain protein 105