PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008481-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 346aa    MW: 39116.2 Da    PI: 6.4278
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008481-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.41.6e-22953145
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                   kr en+s rq+t+skRr+gilKKA ELS+LCd+++a+++fs++gk
  NNU_008481-RA  9 KRLENTSGRQITYSKRRTGILKKARELSILCDIDIALLMFSPSGK 53
                   789****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.301153IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-25295IPR002100Transcription factor, MADS-box
CDDcd001201.08E-25254No hitNo description
PRINTSPR004048.1E-19323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-201154IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGRVKLKIKR LENTSGRQIT YSKRRTGILK KARELSILCD IDIALLMFSP SGKPTLCLGE  60
RSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHE VNIQDFLGAS TQTVEELTNQ  120
SRLLQAQLSE LHKRLSYWTN PDKIEHIEHL RAMEDSLKES LNQIRTHKEN FGKQLISLDC  180
SSQFQNEMHL PLGMSSEPQA QSISWLPGND SQHIMLPEDP NLLSQRDLDC STDASIPSFS  240
TYFTAVKPEV DSSGQEGGAL DELSRNACLR LQLGGQYPYP PYGFNLLSEK KFKTEVEMSL  300
HENPVDYQVN SGFEAARPGY DPSNRSWASS SGSCSITMFD EHSYPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-13192190MEF2 CHIMERA
6byy_B1e-13192190MEF2 CHIMERA
6byy_C1e-13192190MEF2 CHIMERA
6byy_D1e-13192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258315.10.0PREDICTED: agamous-like MADS-box protein AGL65 isoform X2
SwissprotQ7X9I01e-107AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A1U7ZV720.0A0A1U7ZV72_NELNU; agamous-like MADS-box protein AGL65 isoform X2
STRINGXP_010258314.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-109AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]