PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_008468-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 281aa MW: 32540.8 Da PI: 7.1642

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008468-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.7	5.5e-54	10	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeel+++yL++++++ ++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfFs+r++ky++g r+nrat sgyWkatg+dk++ s + NNU_008468-RA 10 LPPGFRFHPTDEELIMYYLRNQARSMPCPV-SIIPEVDIYKFDPWELPEKAEFGETEWYFFSPRERKYPNGVRPNRATGSGYWKATGTDKAIRS-G 103 79**************************.89***********99999************************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kk Lvfykgr pkg+ktdW+mheyrl NNU_008468-RA 104 PKYVGVKKALVFYKGRPPKGVKTDWIMHEYRL 135 99**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-67	7	163	IPR003441	NAC domain
PROSITE profile	PS51005	61.349	10	163	IPR003441	NAC domain
Pfam	PF02365	2.9E-27	11	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MDGRKKSSDL PPGFRFHPTD EELIMYYLRN QARSMPCPVS IIPEVDIYKF DPWELPEKAE 60 FGETEWYFFS PRERKYPNGV RPNRATGSGY WKATGTDKAI RSGPKYVGVK KALVFYKGRP 120 PKGVKTDWIM HEYRLDGSNC RQPTKINGSM KLDDWVLCRI YKKRHLERSV EQNDDPCLRE 180 NTETNSSGAS EQQQPLISPR TCSLAHMLEM EYLSMSHLLN DGNPLDDLPM QFQTTENNNH 240 EVDKLFSGDM AHQFPSTAKF QVNQSTVFNP PIFINPLFEF Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-71	10	164	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-71	10	164	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-71	10	164	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-71	10	164	17	166	NO APICAL MERISTEM PROTEIN
4dul_A	2e-71	10	164	17	166	NAC domain-containing protein 19
4dul_B	2e-71	10	164	17	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258284.1	0.0	PREDICTED: NAC transcription factor 29-like
Refseq	XP_010258289.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	K4BNG7	1e-116	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A1U8A9Q2	0.0	A0A1U8A9Q2_NELNU; NAC transcription factor 29-like
STRING	XP_010258284.1	0.0	(Nelumbo nucifera)
STRING	XP_010258289.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-105	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]