PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008307-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TCP
Protein Properties Length: 376aa    MW: 41270.1 Da    PI: 9.1084
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008307-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.28.7e-3272157388
            TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                    g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ ++ +++ +c  ++s ++ ++ s s+
  NNU_008307-RA  72 GGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLQIPPN-FCqYPQSLVVPHEVSASQ 157
                    79*************************************************************55555.886444444333322222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.22973131IPR017887Transcription factor TCP subgroup
PfamPF036342.4E-2973182IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MYRGRPKKLL IVVVAHDEER NKMITSSREK DFQAKQEDNT NYGKVTMASS SSRSWSSALK  60
DPRIVRVSRS FGGKDRHSKV CTIRGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL  120
LNAAKDEIDE LPPLQIPPNF CQYPQSLVVP HEVSASQSSL ASLVDANSEY LKDGGAHSLL  180
LAKGGFKITN NVDGEDQTLS PRSTYWNPSQ SAQLSSHNSF PRVNNNHVSL PGFLNNAMPC  240
NSYYHLEPSN LSLSHIGSQG HSSEDPLSYN FISLSSSSLS LPTGSQLLVC PSGSTPSFLP  300
PLITASMECG PSRQVNHFQM LSPSSQNQLP NSLAQSAYSS TGPPVRPFQL SINPKFLHSQ  360
NNNGSQQPNN KDNSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1878132155Putative transcription factor PCF6
5zkt_B3e-1878132155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258030.10.0PREDICTED: transcription factor TCP5-like
RefseqXP_010258031.10.0PREDICTED: transcription factor TCP5-like
TrEMBLA0A1U7ZWB70.0A0A1U7ZWB7_NELNU; transcription factor TCP5-like
STRINGXP_010258030.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-46TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5