PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008274-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family YABBY
Protein Properties Length: 187aa    MW: 21162 Da    PI: 10.0199
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008274-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY154.41e-4721462163
          YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                    d + sse++Cyv+CnfCnt+lav +P +  + +vtv+CGhC++l  ++       ++  +       ++l ++l++++  l++    ++++++s s
  NNU_008274-RA   2 DYVPSSEHLCYVRCNFCNTVLAVGIPCKRFLDTVTVKCGHCSNLSFLST------RPPLQ---G---QRLDQQLGSQK--LQVFGNGYRKSQSSSS 83 
                    67899*************************************9754222......22222...1...23444444444..4444444444444444 PP

          YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                    s   s+++++ +p+vp v++PPek+ r Psaynrf+keeiqrika+nP+i hreafs+aaknWa +
  NNU_008274-RA  84 S---STSTQQTSPNVPYVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARY 146
                    4...56789999****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.3E-566146IPR006780YABBY protein
SuperFamilySSF470951.44E-891144IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.6E-5100144IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDYVPSSEHL CYVRCNFCNT VLAVGIPCKR FLDTVTVKCG HCSNLSFLST RPPLQGQRLD  60
QQLGSQKLQV FGNGYRKSQS SSSSSTSTQQ TSPNVPYVVK PPEKKHRLPS AYNRFMKEEI  120
QRIKAANPEI PHREAFSTAA KNWARYIPYP PNGSISENNK SNERSITSLM ERIDNAPKKL  180
ESTEHKR
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8548047e-49AY854804.1 Gossypium hirsutum isolate 1 CRABS CLAW mRNA, partial cds.
GenBankAY8548057e-49AY854805.1 Gossypium hirsutum isolate 2 CRABS CLAW mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257971.11e-139PREDICTED: protein CRABS CLAW-like isoform X1
SwissprotQ76EJ03e-63YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A1U7ZUA81e-137A0A1U7ZUA8_NELNU; protein CRABS CLAW-like isoform X1
STRINGXP_010257971.11e-138(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.13e-60YABBY family protein