PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008273-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family SBP
Protein Properties Length: 560aa    MW: 61350.7 Da    PI: 8.1167
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008273-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.53.3e-42176251277
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                    Cqv+gC++dls+ keyh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q
  NNU_008273-RA 176 CQVHGCDMDLSSSKEYHKRHKVCEAHSKTAKVIVNGVEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 251
                    **************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-34170237IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.744173250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-39174253IPR004333Transcription factor, SBP-box
PfamPF031101.8E-32176249IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MESWSYGSEG KGFVLSDEMI SPADALTRSR KMFMGWDLKP PCNYESTMLV QGREAVESQG  60
FMELGFPDII KKPLPDNQID GFMASKTDSE REASSSVVTL KAFFGEEESS SRLSSSVVDS  120
NSRDSSLIDL KLGRLADYRD SKNGESSKEA PILSSVRSSL PAKRARTNLN SQTPFCQVHG  180
CDMDLSSSKE YHKRHKVCEA HSKTAKVIVN GVEQRFCQQC SRFHLLAEFD DGKRSCRKRL  240
AGHNERRRKP QLGSQSGKPG KLLPSYHGAR FLGGPLSTKP SFICPDIFPN GMLRPVKYET  300
SNWSRQVKLE DTVYGPQPAI PITDGNLLPK SFLPPYGVEK QYPSLHGNVI DATPGSIFHE  360
NGNRYHDLVG PNSSSRSMFR NASSGSEDFT VFDTASTIQG LSGVSDSGCA LSLLSAQSRN  420
SSSHSSGIPM ARPLIIQGSR APYSISQFPE KFLGVSSQAS TSVASTRFSS SGLNALEVDH  480
MEPVLVSDAS NPVDFEVRTD GIFQASDFVS SKDSLSHDHG PTVNLLQLSS QLQRVERQRH  540
SLQVSKGCGN WMNASSYLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-291752491084squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257963.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_010257964.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_010257965.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_010257967.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_010257968.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
RefseqXP_010257969.10.0PREDICTED: squamosa promoter-binding-like protein 13A isoform X1
TrEMBLA0A1U8A7Q20.0A0A1U8A7Q2_NELNU; squamosa promoter-binding-like protein 13A isoform X1
STRINGXP_010257963.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.16e-52SBP family protein