PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_008264-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | E2F/DP | ||||||||
Protein Properties | Length: 217aa MW: 24699.4 Da PI: 9.8033 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 61.2 | 1.6e-19 | 38 | 82 | 21 | 70 |
E2F_TDP 21 eegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 +gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwk NNU_008264-RA 38 ADGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNKIRWK 82 4599**********...99..****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 2.3E-16 | 20 | 83 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.1E-17 | 37 | 82 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.62E-12 | 37 | 81 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.0E-19 | 38 | 82 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MVNSPLGTPV SGKGGRVYNK SRVPKHIKSG PQTPVPNADG ILDLNKAADT LEVQKRRIYD 60 ITNVLEGIGL IEKKLKNKIR WKPGEKDDDA TMLHAEVENL SMEEQRLDDR IRLLHCKEGN 120 EKIFLHTTVS LLTISPLLWP QQTTNHWGFI AISNAPSDYN DYYHHYRVVY PRPSEIPWKE 180 LSNSVHLIAP VQIKHLNFGK VLTWTRLGVK KPTSDIV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 1e-15 | 39 | 82 | 28 | 72 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010262959.1 | 8e-56 | PREDICTED: transcription factor E2FA-like | ||||
Refseq | XP_019053996.1 | 8e-56 | PREDICTED: transcription factor E2FA-like | ||||
TrEMBL | A0A1U8Q7H7 | 2e-54 | A0A1U8Q7H7_NELNU; transcription factor E2FA-like | ||||
STRING | XP_010262959.1 | 3e-55 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 2e-32 | E2F transcription factor 1 |