PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_008247-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 303aa MW: 32788.5 Da PI: 7.9822

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008247-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.5e-39	25	84	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s NNU_008247-RA 25 PNQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRS 84 6799*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	24	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-33	27	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.618	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MQDLQSMGNG GGRVFVGDRR LRPHPNQALK CPRCDSLNTK FCYYNNYNLS QPRHFCKSCR 60 RYWTKGGVLR NVPVGGGCRK TKRSKPKPSP DTNKEKKATT SSHSSSESSS LTAATTATTT 120 ETASAPSSSS AAAEPGIGLL NFPDSRLFLS QNPSPSFEPC MLDTLEKPSA ADGGIFPESG 180 SFTSLITGSN PGLVGLNYSD ISPFRMHAQQ RRMASMVEEM KMQELTAGGF IDQTFPVELP 240 EPGLQNRTNN GNGGGIMGLD WASSGDGVGG LFDFPSSIDQ CYWGQNQWTD NDQGLYLPQN 300 SPF

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019053420.1	0.0	PREDICTED: dof zinc finger protein DOF5.4
TrEMBL	A0A1U8Q5T4	0.0	A0A1U8Q5T4_NELNU; dof zinc finger protein DOF5.4
STRING	XP_010261115.1	1e-134	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	1e-34	OBF binding protein 4