PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008242-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 345aa    MW: 38013.4 Da    PI: 4.9084
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008242-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08941261955
                    HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  NNU_008242-RA  94 RFQILRDLIPHS----DQKRDKASFLLEVIEYIQFLQ 126
                    79*********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.87375125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-782130No hitNo description
SMARTSM003530.002783131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-1091143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-694126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1394146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
PVEQLGQWSS EERPLRTLFT HHTSLISQSS SKQPEQKSQR LIDMMKSAKG HQEEEEDDEE  60
EFASRKEVPF QKVDLTVKVD GKNINQKTAT LTPRFQILRD LIPHSDQKRD KASFLLEVIE  120
YIQFLQEKVQ KYDAAFPGWN QEPTKLNGPG PGIVFTGKFD DNNIAVSVSP PMLANSQNPL  180
DADKAVPLPI PLQANMFTPV VRGGGLSQPP QRPLSDADNV ASHPQSQLWQ GRVCTTEFPV  240
TSDILNEQDD MTIEGGTINI SSVYSQGLLN NLTQALQSCG VDLSQASMSV QIDLGKRTVG  300
RLAATTSSAK DQEDPSSNQA MTHSRVASSG EDSDQASKRL KTEKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257915.10.0PREDICTED: transcription factor BIM2 isoform X4
TrEMBLA0A1U7ZU590.0A0A1U7ZU59_NELNU; transcription factor BIM2 isoform X4
STRINGXP_010257912.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-64BES1-interacting Myc-like protein 2